RNA id: TCONS_00011056


Basic Information

Item Value
RNA id TCONS_00011056
length 319
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_005062
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1452900 ~ 1453339 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTGGAAAAACACGAGACCCTGTGACCCACACTAACAACCCAACAAACAAAACGAGTTCACGATGAGTAAAACAATAGTGAGCCCCCACAATGAGAGAAGCTAACACTATAATCAGCTCTCTCCAACAAtcctactgaaaaaaactttgtaaaccagcctaggctgatagcctggttttagaggggtttgggccacttccaggctggtcttTACTGGTCAGgctggaaaccagcctggaagtggccaaaacccctctaaaaccagcctaacGCACACTAGCTAGTGACCGACAGAGGTTTATGATGACTTTACTTGC

Function

GO:

id name namespace
GO:0045110 intermediate filament bundle assembly biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0010467 gene expression biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011055 lncRNA downstream 375786 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 453164 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 988911 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 1044269 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011053 lncRNA downstream 1097345 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011057 lncRNA upstream 546680 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 547297 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 614624 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 614773 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00010791 lncRNA upstream 619683 2073022 ~ 2236997 (-) False XLOC_005069
TCONS_00009857 mRNA downstream 46420 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA downstream 47672 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009856 mRNA downstream 82528 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009855 mRNA downstream 91383 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009854 mRNA downstream 107338 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009860 mRNA upstream 102808 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009861 mRNA upstream 239675 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009862 mRNA upstream 494254 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009863 mRNA upstream 494543 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009865 mRNA upstream 1052180 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009831 other downstream 830611 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 37133 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 2833027 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2842210 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2844518 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2844888 4298227 ~ 4301376 (-) True XLOC_005113

Expression Profile

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