RNA id: XR_006252989.1



Basic Information


Item Value
RNA id XR_006252989.1
length 1075
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC122361632
representative True

Chromosome Information


Item Value
chromosome id NC_056715.1
NCBI id CM032084.1
chromosome length 22256391
location 15201696 ~ 15210544 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTCAGAGCAACCCTTGACCTGTAACGAAGAGCAGAAGATTATGCCAGAAAAAAGGTGTTTAGAAGAAAAGATCTCAAAAAATGTGCGGTTTGGAAAAGTTTCAATATGAAGGGTAGGACGTTGGGAGCTTCTGGATGAGATTAAAACAACGGAGAAACTGCACTTTCTGCTGTATGTAAATACTGCAGCTTTCACTGCGGGGCTAGAAACACATCTGATGTGACCAAAAAAGGTGAGGCAGCTCTGAATTGGAAACATcgaaaagaaatggaaatacaTTAAGGCTGTAAGCTGCTTCAGTTTCAAGGTTCTGTGATCTGATTGGATGCAGCTGCAAGAGAGCACCATGGGAATGCAACAGCAGCTGGATTTAGTGTACAGCCTCAGAACCTAGAAAAACAAactctttctgtgtctgtgtgtgtgcgcgattAACTTTTCAAGTGTCCAGGCTTTACACAAAGGGATTGTGCAAACATTGCAAACAGAAATTTACAAACTGAAAATTCAATGATTCAACAATATCCCCTACACATGTCTGTGCACTCCAATCACTTTTGACGATTACTCCTTGTACATGGATTGTTTTTAGCAATCCAAATaaactgtaacattttttataactaaaaacagttataatgcattaatacatgatacaaaataaaaatatgattttccgTAATGTGGCCTCACTTAAACCAttgtttaaaatactttcttaaACTGTTTTGATCTAAAAATCAGAAAGTCTTAGTCTATAGCTAACAACAAGTCTCTGCACGTTTCTGGTTGAGACTGTAAAGTGTGGTGAAATCTAGGCGTGAAATAATCATTTCACAGCAGGGGCATGTGCAGGTATGCCTGCAGCCAGCAGGCTTATGGAGTCCCGCATCTATGTCAGCAAGCGGTTGTGCAAGGTTTGGCTGCGTCACAAGGTGATGATGGACATAATTTCACGCCTCGGGCCTTCCAATGCCGTTCACTTTACAATCTGCAGGACGAGGCTTGTAGGAGGTTGCCGGAGCAACAGGTTTTCACATGAAGTGATTATTGTTGGAGGAACAAAAGACATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU179061 lncRNA downstream 137025 15059993 ~ 15064671 (-) True crip1
TU179090 lncRNA downstream 156330 15039723 ~ 15045366 (-) True G121214
TU178951 lncRNA downstream 409628 14790929 ~ 14792068 (-) True G121123
TU178903 lncRNA downstream 424587 14776886 ~ 14777109 (-) True G121096
TU178876 lncRNA downstream 476942 14719559 ~ 14724754 (-) False LOC122361652
TU179156 lncRNA upstream 63539 15274083 ~ 15274615 (-) True G121269
TU179199 lncRNA upstream 102021 15312565 ~ 15313252 (-) True G121301
TU179218 lncRNA upstream 184461 15395005 ~ 15395362 (-) True G121320
TU179219 lncRNA upstream 185353 15395897 ~ 15396108 (-) True G121321
TU179222 lncRNA upstream 192097 15402641 ~ 15405640 (-) False pax9
XM_043263362.1 mRNA downstream 101739 15083987 ~ 15099957 (-) False crip2
XM_043263641.1 mRNA downstream 137018 15060054 ~ 15064678 (-) False crip1
XM_043262801.1 mRNA downstream 175281 15023470 ~ 15026415 (-) True ptgr2
XM_043262297.1 mRNA downstream 207181 14989660 ~ 14994515 (-) True kif3cb
XM_043262550.1 mRNA downstream 213762 14970900 ~ 14987934 (-) False asxl2
XM_043262852.1 mRNA upstream 2328 15212872 ~ 15218170 (-) True zfp36l1a
XM_043262169.1 mRNA upstream 187244 15397788 ~ 15405888 (-) False pax9
XM_043262168.1 mRNA upstream 188251 15398795 ~ 15406503 (-) True pax9
XM_043262250.1 mRNA upstream 272567 15483111 ~ 15505931 (-) True rps6ka5
XM_043262251.1 mRNA upstream 272567 15483111 ~ 15502687 (-) False rps6ka5
TU179062 other downstream 101772 15083818 ~ 15099924 (-) True crip2
XR_006253025.1 other downstream 175281 15010826 ~ 15026415 (-) False ptgr2
XR_006253090.1 other downstream 361883 14812920 ~ 14839813 (-) False myo6b
TU178546 other downstream 2001669 13196907 ~ 13200027 (-) False LOC122361883
TU178308 other downstream 2381028 12817192 ~ 12820668 (-) True G120660
TU179418 other upstream 474995 15685539 ~ 15686948 (-) False LOC122361708
TU179430 other upstream 478347 15688891 ~ 15689794 (-) True G121438
TU179448 other upstream 527718 15738262 ~ 15740486 (-) True G121456
TU180175 other upstream 2751745 17962289 ~ 17963965 (-) False acyp1
TU180176 other upstream 2751745 17962289 ~ 17963965 (-) False acyp1

Expression Profile