RNA id: TCONS_00009860


Basic Information

Item Value
RNA id TCONS_00009860
length 1140
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_005064
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1556147 ~ 1557286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACACATGGACGTTTATGCCCAATTCCAACCTGTCCCTCCCTGACCGCCTGGTCAATGACAGTTTTTTCCCCGGGAACGAGTCTGACTTTGGTCTGGAGTTTTACCCTCCCAATGGCACTCACCCTGGCTTTGACCACACCAGTTCGGTGGTCATCACATTTGTGTACTTTGTAGTCTGCGCAGTGGGACTATGCGGGAACGCGCTGGTGATTTACGTCATCCTACGCTACGCCAAAATGAAGACGGTCACGAATATCTACATCTTAAACCTGGCCGTGGCGGATGTGCTGTGCATGCTGAGCTTGCCATTCATTGCCATACAGCTCTCGCTTCTCCATTGGCCGTTTGGATCTGCTATCTGCCGCGTCGTGCTAACCGTGGATTCAATGAACCAGTTCACCAGTATCTTCTTTCTGACGGTCATGAGCTTTGATCGATACCTTGCTGTAGTGCATCCGATCAAATCCACCAAATGGCGAAAGCCACGAATGGCCAAAACTATTAGTTTAGGCATGTGGAGTGTAGCTCTGCTGGTCAACCTACCGATTATGATCTACAGCGGGGTGAATGCCAAAAAAAATGAAGCCAGGACGTGCACCATGTTGTGGCCGGAGCCACAAAACACCTATTACACCGCTTTCATATTCTACACATTCTTCCTAGGGTTTTTCCTGCCGCTGATAGTCATTTCAATGTGCTACCTGCTTATTGTGATTAAAGTGAAGTCCTCCGGCATGCGAGTGGGATCCACTAAAAGAAAGCGATCCGAGCGGAAGGTCACCAGGATGGTGTCTATTGTCGTGGTggtgtttgtgctttgctggctACCTTTTTACGTCTTCAACGTGACGTCTGTGACTGGAACCGTTCCTACAACGCCTGTGCTCAAGAGCACATTTGACTTCGTGGTGGTTTTGGGTTACGCCAACAGTTGCGCCAATCCCATCCTCTACGCATTCCTGTCGGACAACTTTAAGAAGAGTTTCCAGAATGTGTTGTGCCTGAAAAGAGTCGGGGGATTGGATGAGATCGACCGAAGCGACAGCCGACAGGACAGGACACGAATGGTCAACGATATCATGACGGAAACGCATAACGCCGCGCTGCTCAATGGAGATCTGCAGACGACTATCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004994 somatostatin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-140130-1 Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human SSTR2 (somatostatin receptor 2).

Ensembl:

ensembl_id ENSDART00000082110

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011056 lncRNA downstream 102808 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011055 lncRNA downstream 479033 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 556411 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 1092158 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 1147516 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011057 lncRNA upstream 442733 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 443350 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 510677 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 510826 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00010791 lncRNA upstream 515736 2073022 ~ 2236997 (-) False XLOC_005069
TCONS_00009857 mRNA downstream 149667 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA downstream 150919 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009856 mRNA downstream 185775 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009855 mRNA downstream 194630 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009854 mRNA downstream 210585 1338341 ~ 1345562 (-) True XLOC_005058
TCONS_00009861 mRNA upstream 135728 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009862 mRNA upstream 390307 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009863 mRNA upstream 390596 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009865 mRNA upstream 948233 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009866 mRNA upstream 948840 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009859 other downstream 65559 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 933858 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 2729080 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2738263 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2740571 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2740941 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 3842394 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_05235089_05236228.mRNA True 2130 mRNA 0.44 1 CI01000047 5234144 ~ 5236273 (-)