RNA id: XM_043264938.1


Basic Information

Item Value
RNA id XM_043264938.1
length 3476
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC122363059
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 2207199 ~ 2240260 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTTCACCTCAGTTCCAGACATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGaaagattaataaaagcattcCCAATAAAACCATCTTTCACGTCAAGCTAACAGACACGGCCATCCGGACGCTGGAAGCTTATAAGAATCTCAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCTGCCTCCTTGGATTCTCCTGATGCTTTCCGTGTCTTCTCCTTCTACCTATccagtgacagtaaagacaaacCTCAGGCCAGCTTCGACTGTATTCACCAGTATGTTTCTGGAGATGGCAGGGAGCATCTGGAAAGTCAGGGCAGTATTCAGGACAAAATCACGGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAGATCAAACCTGGATCCACACGTCCAAgtAAATGTGTGAAGATTAAGAAGAAACAGGGCCTGCCTACCAGCTTTGACAACACTAATAGGCATTCGCCCAGCAACAAGAGGAACGGTACACCTGGCTTGGTGGCCCACAGGCCTTTGAAAGAACGAGTCATTCATGTTCTGGCCTTAAAGCCCTACAGCAAGCCAGAACTACTGCTCTGGCTGGAGAAGGAGAAAGCCAGCCCCAAGGACAAGGCCGACTTGAATGCTGTGCTGGATGAgGTGGCTAAACTCAATCCCAAAGACCACAGCTTTACCCTGAAGGATGATTTCTACAGACATGTGCGGAGAGACTGGCCCGGCTATGTCGAGGAAGAGCGGCAACTCATTCAAAGGGTGTTGGCAAGAAAACTCCAGCctctcagcagcagcagcagcagccagtTGAAAAGCCTCCAGTCCAGCCATTCATTCCACAAAATCAGGGATTCTCCATCCCAGCTCAGCCCTGTCAAGAATCTCTCCATGAAACGCCCAGTGCCTTCCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGACCAGAGCATGCCCTCGCAATCTCCTTCCAACGGACATCTCGGCTCCTCCGTGAGCCGTAGCTCTTCCACTCACGGAAACGCAAGTTTGCAAAGGAGCAGCGGCGTGGCTCAGCAGAGCCCCGATGGTCTTTACCAGCGGCACAAGCTCGCGGAGTCCAACAGCGTACCCAAACCAGAACAGCCGGAACCAGCGCAGCAGCCGTCGTCCAGCCCCAAACACCCACGAACTGAACCAGAAATCTGCACTGAACAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAGAGATTAAAACCTGAGTGGGTCGAGACCAGCCCGGACCTCAAACAGAACCAGGAAAATATTAATGACCATGGACGACCCAACACACCTGTCACCCGTGCCTCGCCCGATGACCTGCCTGACTATTTATTaaaaTACAACGCTATTACAGGCTCTGAGCAGCGGCAGAGATACAAAGAGGATTTTTGTGCGGAATATGACGAGTACAGGGACCTTCATGAACGCATAGGGAAAGTCACAGAGATGTTTGTTCAGCTGGGATCCAAGATAAAGACGCTGTCTCCCGGGACACACAAGTATAAGgtAATGGAAGATCAAATAATGGAGAAGTATAGGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAAAAGAAGCGCTGCGAATATCTCCATCAGAAACTGTCACACATCAAAGGCCTGATTCTGGACTATGACCGCACACAAGCACCCTCCTAGTGCCAGCCGttcctctccctcctcctcctcctcctccaaacGACTCCTCAGTGGAAATAAACCAGGACCAAATGTCTGTTAAGCAGGACAAGGCATTTCCACGAGGAGGTTCCTCCACACGAACTGTGGGTAAACGGTGTGGAGGCTGAGGATCTAAGCCCAAACTATCAAACAAAGGCCAAGACCTCCGACTAGTGACTTAAGCCCTttaaagtaaacttttttttttttttttttttttttgtttgtttgtttgtttgtgtaaaaagtGAGGAATTGGTTAGCCTTAGGACACAACATAagccaaaatataatttttttttcttccctacCCAAATGCAGCATATGTGTAACAGTTGCCCGTGATCTTCTAACCTGGGCTCCGAGCTCTGACTTTCAGGGCCGTGGGCCGCTTTTATGGTACAATCATAAAGCCTGGACGATGAGAGATGATTATCTGTACTGTGCTCGGTCTGTCAGTGATTTATCAGAGAACTTAAGCACAgtttctattttgatattttactgAATGTATATTTGTACACTTGTAAGATCTCGACATCTATAATAGAGCGTTTAATCACTGGATAGAATAAGGGAAACCTGGAAGGTGGACCTACCAAACTCTGTAGAGTACGAGGGTGCAATCCGTCATATGAACGTCCGCCGTCAGACTCTTAACTAGACGAGACCTTCCTCTTTTGTGTGTAGCTGCACGGTGAGCTCTGGGATGCAAATTTAATCTTGATTTCCTTTAGCCAATCGTGTAATGAGAGGAAAGGTGCTTAAGCTTGACAGTTCAAAATCGATAAAGTGATAATTTTCTCATGATTTTTGTGTCCAGGGTCCAGTGCTCAAACCACTACAGCACACTGTGTCCTTAAATAATGatgtttataacattattattattattattattgctattattattattatttggacaCTAAACAGCAGAAACAATCATGTTTTGAAGCacattaatttttctttttatctttttttaaaaataaaaatgtattgatttaatagaaaaaaaaaagaagcaaacaaTTCTTTACCCGATCTATTGGATATGTTACAGGAAATTTGacgtatttttttattgaggcTTAATTTCTTGAAGTTTGAATGAACTCTGCGTTCTTTCCCTTTAAAGCATGAAGGAGACCTTCATAGACCGCGTCAGGCTTTCTCTGAATCCTGATTTTCGTTCGGGTCCTGTTTTATGTGAATGAAAGTATAGGGTATGTCTGTTTTCCCAGAATGTAGTACTTGATGGAGGATCTCATTGGTCTTCTGCTTTACGTAACGACCCGACGCAAACACCAAACGTTATAAAAGCAGAGACTTTCCAAAGTCCCTCTTATGTCCGTGTCATTCCTGTTCATGCCCATAGCTTCATGTACATTATGGAAGTATTTTTGTGTCACTTTTGCGCTTTGACATTTCTCTTGTGGAGACTGCTGATCTGTTATTTATGTCACTACAGTGTTAGTTCCTCTAATCCTTGATCCTGATTTGTTATCTGGCTGGAACACTGATAGATTTGCCAAAATAGCATTTCTCTTTATATTGTTAACAGTTTGTTTCATTCTTTCATGGGGCAACTTCATGTATTGATGTAGATGCCTTAAATAAACTGGACCACATTAActtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246962.1 lncRNA upstream 145974 2054520 ~ 2061225 (+) True LOC122323174
TU182694 lncRNA upstream 286308 1919837 ~ 1920891 (+) True G123643
TU182693 lncRNA upstream 288733 1859008 ~ 1918466 (+) True G123642
TU182662 lncRNA upstream 447330 1758294 ~ 1759869 (+) False G123622
TU182663 lncRNA upstream 447370 1758245 ~ 1759829 (+) True G123622
XR_006246969.1 lncRNA downstream 82329 2322589 ~ 2331573 (+) False LOC122323220
XR_006246970.1 lncRNA downstream 82329 2322589 ~ 2329684 (+) False LOC122323220
XR_006246971.1 lncRNA downstream 84056 2324316 ~ 2331573 (+) True LOC122323220
TU183041 lncRNA downstream 97962 2338222 ~ 2403970 (+) True G123860
TU183042 lncRNA downstream 110382 2350642 ~ 2403970 (+) False G123860
XM_043265015.1 mRNA upstream 39908 2159316 ~ 2167291 (+) True zgc:162879
XM_043264685.1 mRNA upstream 51696 2095553 ~ 2155503 (+) False sema4ba
XM_043264686.1 mRNA upstream 51696 2095556 ~ 2155503 (+) False sema4ba
XM_043264684.1 mRNA upstream 51696 2106004 ~ 2155503 (+) True sema4ba
XM_043264425.1 mRNA upstream 173129 2022670 ~ 2034070 (+) True idh2
XM_043216908.1 mRNA downstream 61498 2301758 ~ 2319140 (+) True plin1
XM_043216909.1 mRNA downstream 61498 2301758 ~ 2319140 (+) False plin1
XM_043263974.1 mRNA downstream 100110 2340370 ~ 2392967 (+) False slco3a1a
XM_043263973.1 mRNA downstream 100110 2340370 ~ 2381198 (+) True slco3a1a
XM_043263975.1 mRNA downstream 148828 2389088 ~ 2400009 (+) True st8sia2
TU182722 other upstream 204909 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 635268 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 1152464 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 1159208 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 1384022 814764 ~ 823177 (+) False LOC122362993
TU183022 other downstream 62266 2302526 ~ 2305578 (+) False plin1
TU183320 other downstream 1271706 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1479628 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 2500608 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 2500995 4741255 ~ 4741324 (+) True LOC122323241

Expression Profile