RNA id: XM_043216909.1


Basic Information

Item Value
RNA id XM_043216909.1
length 2888
RNA type mRNA
GC content 0.42
exon number 9
gene id plin1
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 2301758 ~ 2319140 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caaaaaaaaagacaaaaacacaataaaattactTCAACTattgaaaagagaaaatatcagAATAATATGTAATTGCTGTAAaagctgatgatacactgggcaaCATTTAGAGCAATGTTGCCAGGCAACTTTAAGCAACAGGGGCCTCAAGACTGATCTAAATGATCTAGATAGTAATCTATTACCCATGAAAAGTGCCCAAGcatcattgttaaaaaaaacaaaacaaaaaaaaaaacacatcataaCACTGCTATGAATACACAACATAGcattcacacatgcacacgtcTCCTCTTTTTGTGAACAGGAAAAAGTAAGATGAAAGCCAAAACAGAAAACTCTCATATTTTCAATGTTGAAGTAGCTAGAGCTGGAAAAATTCTGACATCTGCTGGCGATGATTATATGGCGAGAGTAACAGGGGCTTGCACAACGCTAACATCTAGTGGTCGTAGATGTTATTGCCTCACAAAACTGACAACAGCGTGCAACGAGTGAAAGACCGCTGAGAAGCAGCTAATAGTAACCTGGTAGCTTGAACTTAACATGCTTAACAAGCTGCATGCATGTTTACGTGAAATGTCGCCTCAGTGTCTCATAAGAGCATTTCAGCCATATTGCTGACAGCTGCTATCAAACTAGACCACTGTGTGCCatgctaaaaacaaacagacaaaaaaacagctaCATTTAATATGGTTTGCTTATCAGGCAATAAGTTGTTAACTGTTTTCCTGCTGGTCTAGCTGCAGGAACCCAACTTGGTCTGTTTAAAGGTCTAGAGATGGTTTTAACAtactttttagtcatttttttttcttcaggatgCTGGTAGCTCTAAATCAGGCATCCCAAATTATggtaaacaagaaaaaatggttcagCGGCTGATTGAAGACTACTGGAGATGGCGTCTGAGAAAAAGGACACCGTTGATGTTTTGAAGGAACAGaATGTACTCCTTCGAATCCGCAATCTTCGATCTGTGAGTTCCGCTCTGGAATCCATTGGGAAGACATACATCCATACGAAGCAGTCTCATCCCATTATAACCTCTGTGTGTGAGATGTATGAGAAGGGTGTAAGTACGGCTGGCAGCTTGGCTGTATGGAGCATTCAGCCTGCCCTCCATGTGCTGGAGCCTCAGCTTGTAGCAGCCAACTCATTGGCCTGCAGAGGACTGGACCACCTGGAGGAGAAGGTTCCAGCCTTGCAGTATCCACCTGAAGAGCTAACAGCAAGCATCAAGGAGCTGGTGTCATCAACTTTGGAAACTGCCAAAGATAGTGTTTCCTGTCCAATCAGACAGACCTCTAATGTTGTATTGGACAAGAGAGCTGACAGGGCTCTAAGTCTGATGGAGAACCTAGTCGACTTCGTACTTCCTGCATCTTCAACTGAGACAGAGGATGATGGGAGTATGGGAGAGCAGGACCCTGATGTTGGAACCTCTGGCCCAAAACCCAGCTTCAGCAGGCTGGGAGCACTGGCCGGCACCATTTGCAGACGGGCATTTGAGAAGACAGCTGCACAACTACAGCGCTCTAAACGTCAAGGTCAGGCACTGGTCACACAGATCCCTGGCGTGAGTCCCCTGAGTAATGGACTGCCGAGGCTGGTCAGTGGATTAGGGCAGCAGTTATTGAAGATCTATGAGTCTGTGGTGGCTAATGTGAAAAAACCCCATCAAACCAGCTTCAACCTGGCTAAGGATGGAGTCAGCCTTGTCCTGCGGTCCTTTGGCATAGTCAGGGAGAGAGCACTGCACAACCTTTCTTATTATGGGCTGATTCCTAGGCGATCTTCCAAGCCAGAAGGAGGATCCCAAAAGGCGGAAAACGATAGATCAAAAGAATGTTTGAGTTGCACTCTGGTGCTGGAGACTACTGTAGGAGACCACATGCACAGTCCCAGTGGCAGTCCTCAAAAGCAGCCCCTTAAGGTTACAGAGCTCAAGGAGATATCAGAGGAGACCCGTCAACTGAAGAAGAAGGTCATGAAACAGATTCCTATACAGCAGAAAGTAGTTCTTGGTGGCAGCAACAAGAAAGTATCCAACCACAGATCCCAGAGGAAGAGTCTGACAGATTGCACCCAGATCTACTCCTCCTCATCTTCTTACATTCGTACAgtgcaaaacagcagaaatgCCTCCCCTACTGCAGAATGACAATAGAAGAACAGTCAGAGTGGGATGCGGGTTTCATTATTTATCCTGCATATCCGTCATGTTCATTTAAAGCATTATGCAAAGCTGTCATGGGTCATGATTTCTAAAGTGCTGGCAGAGATTCCGCAATCGGTGACCTACATATAGCTATGCATTTGAGGCTCTGGAtcgtgtttttccattttatttcccATTATAAAGTTATTAAGTTAATTTGCTGCCTGAAAAACATTATCTTATcactgttaaaaacagttgcgctgctaaaaggaatagttcacaaaaaaaatgaagattctgGCTGTtctgggtcaccactgacttccgcactattttttttcctgctatgGAAGTAAATGGTGACCAGAACCatctggttacaaacttttttcaagaTGTATTCCTTTGTGTACGGCAGAACAAACAGAttaatacagatttggaacaacttgaagGTGAGtgatgacagaagtttcatttttgggtgaactattcctttaatatttttctgaaaacagtGATGCATTGTTTTCAGTATTCcttgataaatataaagttcaaaagaacatcatcaccagtgtttatttgaaaccaatattttgtaacattataaatgtctttaccatCGTTATagaatcaatttaatgcatcctagcaaaataaaaatgatttactttaaaaaccctactgaccccaaacttttgatcaCTAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182978 lncRNA upstream 61499 2238913 ~ 2240259 (+) False LOC122363059
XR_006246962.1 lncRNA upstream 240533 2054520 ~ 2061225 (+) True LOC122323174
TU182694 lncRNA upstream 380867 1919837 ~ 1920891 (+) True G123643
TU182693 lncRNA upstream 383292 1859008 ~ 1918466 (+) True G123642
TU182662 lncRNA upstream 541889 1758294 ~ 1759869 (+) False G123622
XR_006246969.1 lncRNA downstream 3449 2322589 ~ 2331573 (+) False LOC122323220
XR_006246970.1 lncRNA downstream 3449 2322589 ~ 2329684 (+) False LOC122323220
XR_006246971.1 lncRNA downstream 5176 2324316 ~ 2331573 (+) True LOC122323220
TU183041 lncRNA downstream 19082 2338222 ~ 2403970 (+) True G123860
TU183042 lncRNA downstream 31502 2350642 ~ 2403970 (+) False G123860
XM_043264938.1 mRNA upstream 61498 2207199 ~ 2240260 (+) True LOC122363059
XM_043265015.1 mRNA upstream 134467 2159316 ~ 2167291 (+) True zgc:162879
XM_043264685.1 mRNA upstream 146255 2095553 ~ 2155503 (+) False sema4ba
XM_043263974.1 mRNA downstream 21230 2340370 ~ 2392967 (+) False slco3a1a
XM_043263973.1 mRNA downstream 21230 2340370 ~ 2381198 (+) True slco3a1a
XM_043263975.1 mRNA downstream 69948 2389088 ~ 2400009 (+) True st8sia2
XM_043264868.1 mRNA downstream 91593 2410733 ~ 2439836 (+) True chd2
XM_043264828.1 mRNA downstream 526903 2846043 ~ 2853173 (+) True nr2f2
TU182722 other upstream 299468 2001786 ~ 2002290 (+) True G123664
TU182587 other upstream 729827 1565426 ~ 1571931 (+) True G123568
XR_006253178.1 other upstream 1247023 1045211 ~ 1054735 (+) True tmem123
XR_006253179.1 other upstream 1253767 1045211 ~ 1047991 (+) False tmem123
XR_006253182.1 other upstream 1478581 814764 ~ 823177 (+) False LOC122362993
TU183320 other downstream 1192826 3511966 ~ 3554690 (+) True tmem170a
XR_006253139.1 other downstream 1400748 3719888 ~ 3743756 (+) False nrn1la
XR_006246974.1 other downstream 2421728 4740868 ~ 4740965 (+) True LOC122323235
XR_006246980.1 other downstream 2422115 4741255 ~ 4741324 (+) True LOC122323241
XR_006246981.1 other downstream 2422414 4741554 ~ 4741651 (+) True LOC122323242

Expression Profile