RNA id: TCONS_00009861


Basic Information

Item Value
RNA id TCONS_00009861
length 1040
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_005065
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 1693014 ~ 1694053 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacactatacgcacacacatatgcactctATACACGCATACAAACTGTATGCACATGCactctatatacacacacacacacacacacactttctctatATGCACACACCGATGcactctatacacacacacacacactatatgcaGCCATGCATGCACTCAAaaatacatgcacacactctACAGACACAAGCtctatacacacacgcacacaaacacacacacacacacactctctctataTGCACACACCGATGcactctatacacacacacacacacacactttctctctatATGCACACACCGATGcactctatacacacacacacacacacacacacactatatgcaGCCATGCATGCACtcaaaaatacatacacacaaacactctacAGACACAAGCtctatacacacacgcacacaaacaccaTATGCAGAGTTGCAAACATGcaaatgcacatgcacacactttatatgcacacacacacacacactataagtATACACACGTGCACTCTACACACACTCTCtatacactcacatacactaaaTGCACACACTctatacgcgcacacacacgtacTCTACACACACTATACTCActttccaaacacacacactctatatacacacatatgcactCTTCACAAACACTATAAGCACACTcactctatacacacacacacacacaaatatggactctacatagacacacacactctatatGTACACACATATTCACTCTATATGCGCAGACACAATAATCGGTATGCAGACGTGCACTTCACACacaatctatacacacacacatacacatttgcaCTCTACACACACCCactatatgcacacacactctaTACACAGACACATATTCACTCTATACAAATAGACACACTATATGCATAAACACACATGTGCactctatatatacacacacacacacgcactctctCTACACACACTCACCACACATATGCACTCTATATGTGCAGACACACAAATGAAATCtgtacacacacaatcacacacataacaacc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011056 lncRNA downstream 239675 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011055 lncRNA downstream 615900 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 693278 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 1229025 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 1284383 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011057 lncRNA upstream 305966 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011058 lncRNA upstream 306583 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011059 lncRNA upstream 373910 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 374059 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00010791 lncRNA upstream 378969 2073022 ~ 2236997 (-) False XLOC_005069
TCONS_00009860 mRNA downstream 135728 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009857 mRNA downstream 286534 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009858 mRNA downstream 287786 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009856 mRNA downstream 322642 1368645 ~ 1370372 (-) True XLOC_005060
TCONS_00009855 mRNA downstream 331497 1349418 ~ 1361517 (-) True XLOC_005059
TCONS_00009862 mRNA upstream 253540 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009863 mRNA upstream 253829 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009865 mRNA upstream 811466 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009866 mRNA upstream 812073 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009867 mRNA upstream 817826 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009859 other downstream 202426 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 1070725 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 2592313 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2601496 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2603804 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2604174 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 3705627 5399680 ~ 5418340 (-) False XLOC_005137