RNA id: TU183959


Basic Information

Item Value
RNA id TU183959
length 559
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G124533
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4903768 ~ 4908169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgttgagactatttcactcaaacggctctttaccaggaaggatcaactcaaagcgaaataaaacacaagacaggtttttatggattttaaggcttgcaaagattgctgtcgattgcaagcgggagagaagcaggtttctccttaacatcccttttgcctccagacggatctcagtccgcctgaggccgggggccgggcaggcccccgccttctgcctccttccctgctttgcctcctcctgctttgcctcctccgaagctcagtttgcaagtcactttatttatagaggaaaggacaagatacagtaaatgaaaacaattggccacatttcttgtgcgtcagaatcttcactccttcagattcttccggtggccctatcagtattctacggaggccatgttatgaccaagaatcaaactgaaactaaaaggccacaggtgcataactgtcaacatttaactccaacattccgttctcatcaggctgacaaagcctggcacccgatggaagctgtaactgaaggatcaaagttgcaaaatgtcaatacataaccctaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183923 lncRNA upstream 147149 4756230 ~ 4756619 (+) True G124506
TU183922 lncRNA upstream 148582 4754738 ~ 4755186 (+) True G124505
TU183920 lncRNA upstream 151199 4752363 ~ 4752569 (+) True G124503
TU183919 lncRNA upstream 152603 4749922 ~ 4751165 (+) True G124502
TU183917 lncRNA upstream 154074 4749395 ~ 4749694 (+) True G124500
TU183973 lncRNA downstream 103236 5011405 ~ 5183537 (+) True G124544
TU183978 lncRNA downstream 148581 5056750 ~ 5057838 (+) True G124547
TU184034 lncRNA downstream 446544 5354713 ~ 5354980 (+) True G124595
TU184042 lncRNA downstream 584167 5492336 ~ 5494133 (+) False LOC122363125
TU184043 lncRNA downstream 587020 5495189 ~ 5495644 (+) False LOC122363125
XM_043216538.1 mRNA upstream 107932 4759628 ~ 4795836 (+) True LOC122322928
XM_043216673.1 mRNA upstream 159858 4740143 ~ 4743910 (+) True rpl4
XM_043216670.1 mRNA upstream 168301 4726450 ~ 4735467 (+) True lctlb
XM_043216674.1 mRNA upstream 178156 4723039 ~ 4725612 (+) True snapc5
XM_043264727.1 mRNA upstream 315066 4585189 ~ 4588702 (+) True aagab
XM_043265035.1 mRNA downstream 406753 5314922 ~ 5318185 (+) True LOC122363106
XM_043216554.1 mRNA downstream 423034 5331203 ~ 5332855 (+) True LOC122322945
XM_043216555.1 mRNA downstream 438995 5347164 ~ 5350497 (+) True LOC122322946
XM_043216556.1 mRNA downstream 461916 5370085 ~ 5381964 (+) True LOC122322947
XM_043216536.1 mRNA downstream 476926 5385095 ~ 5389352 (+) True LOC122322926
TU183924 other upstream 110517 4759637 ~ 4793251 (+) False LOC122322928
XR_006246975.1 other upstream 161333 4742307 ~ 4742435 (+) True LOC122323236
XR_006246981.1 other upstream 162117 4741554 ~ 4741651 (+) True LOC122323242
XR_006246980.1 other upstream 162444 4741255 ~ 4741324 (+) True LOC122323241
XR_006246974.1 other upstream 162803 4740868 ~ 4740965 (+) True LOC122323235
TU183981 other downstream 163476 5071645 ~ 5110633 (+) True G124548
TU183987 other downstream 231321 5139490 ~ 5140671 (+) True G124553
TU184016 other downstream 317639 5225808 ~ 5226057 (+) True G124577
TU184019 other downstream 320394 5228563 ~ 5229946 (+) True G124580
TU184037 other downstream 486726 5394895 ~ 5395312 (+) True G124598

Expression Profile