Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009863 |
| length | 992 |
| RNA type | mRNA |
| GC content | 0.58 |
| exon number | 3 |
| gene id | XLOC_005066 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 1947593 ~ 1951284 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002009 | morphogenesis of an epithelium | biological_process |
| GO:0032332 | positive regulation of chondrocyte differentiation | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0002062 | chondrocyte differentiation | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0048839 | inner ear development | biological_process |
| GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
| GO:0060536 | cartilage morphogenesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0048708 | astrocyte differentiation | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0030916 | otic vesicle formation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0000987 | cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-001103-1 | Enables chromatin binding activity. Acts upstream of or within cartilage morphogenesis; embryonic morphogenesis; and glial cell differentiation. Located in cytoplasm. Is expressed in several structures, including brain; ectoderm; head; reproductive system; and skeletal system. Human ortholog(s) of this gene implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia. Orthologous to human SOX9 (SRY-box transcription factor 9). |
| ensembl_id | ENSDART00000127937 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00011056 | lncRNA | downstream | 494543 | 1452900 ~ 1453339 (-) | True | XLOC_005062 |
| TCONS_00011055 | lncRNA | downstream | 870768 | 1072485 ~ 1077114 (-) | False | XLOC_005057 |
| TCONS_00009849 | lncRNA | downstream | 948146 | 995830 ~ 999736 (-) | True | XLOC_005055 |
| TCONS_00009826 | lncRNA | downstream | 1483893 | 461129 ~ 463989 (-) | True | XLOC_005045 |
| TCONS_00011054 | lncRNA | downstream | 1539251 | 406187 ~ 408631 (-) | True | XLOC_005043 |
| TCONS_00011057 | lncRNA | upstream | 48735 | 2000019 ~ 2001490 (-) | True | XLOC_005067 |
| TCONS_00011058 | lncRNA | upstream | 49352 | 2000636 ~ 2001824 (-) | True | XLOC_005068 |
| TCONS_00011059 | lncRNA | upstream | 116679 | 2067963 ~ 2073187 (-) | False | XLOC_005069 |
| TCONS_00010789 | lncRNA | upstream | 116828 | 2068112 ~ 2073187 (-) | False | XLOC_005069 |
| TCONS_00010791 | lncRNA | upstream | 121738 | 2073022 ~ 2236997 (-) | False | XLOC_005069 |
| TCONS_00009861 | mRNA | downstream | 253829 | 1693014 ~ 1694053 (-) | True | XLOC_005065 |
| TCONS_00009860 | mRNA | downstream | 390596 | 1556147 ~ 1557286 (-) | True | XLOC_005064 |
| TCONS_00009857 | mRNA | downstream | 541402 | 1403806 ~ 1406480 (-) | False | XLOC_005061 |
| TCONS_00009858 | mRNA | downstream | 542654 | 1403975 ~ 1405228 (-) | True | XLOC_005061 |
| TCONS_00009856 | mRNA | downstream | 577510 | 1368645 ~ 1370372 (-) | True | XLOC_005060 |
| TCONS_00009865 | mRNA | upstream | 554235 | 2505519 ~ 2522487 (-) | False | XLOC_005070 |
| TCONS_00009866 | mRNA | upstream | 554842 | 2506126 ~ 2518178 (-) | False | XLOC_005070 |
| TCONS_00009867 | mRNA | upstream | 560595 | 2511879 ~ 2522487 (-) | False | XLOC_005070 |
| TCONS_00009868 | mRNA | upstream | 560643 | 2511927 ~ 2518205 (-) | True | XLOC_005070 |
| TCONS_00009870 | mRNA | upstream | 828906 | 2780190 ~ 2800859 (-) | False | XLOC_005074 |
| TCONS_00009859 | other | downstream | 457294 | 1490472 ~ 1490588 (-) | True | XLOC_005063 |
| TCONS_00009831 | other | downstream | 1325593 | 619669 ~ 622289 (-) | False | XLOC_005047 |
| TCONS_00009912 | other | upstream | 2335082 | 4286366 ~ 4286480 (-) | True | XLOC_005112 |
| TCONS_00009914 | other | upstream | 2344265 | 4295549 ~ 4298284 (-) | False | XLOC_005113 |
| TCONS_00009915 | other | upstream | 2346573 | 4297857 ~ 4301375 (-) | False | XLOC_005113 |
| TCONS_00009917 | other | upstream | 2346943 | 4298227 ~ 4301376 (-) | True | XLOC_005113 |
| TCONS_00009948 | other | upstream | 3448396 | 5399680 ~ 5418340 (-) | False | XLOC_005137 |
