RNA id: TCONS_00011057


Basic Information

Item Value
RNA id TCONS_00011057
length 614
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_005067
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2000019 ~ 2001490 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTACCTGATTACTGTTccactctccagaaaaccataaagctgtttattttacttttttgttttgcaatttatttattttttattcatgatTCACACCCTTTCAAAATCACCCTAATCaatgatttctttatttaattgagctattcaagccatctggtgacattatattcatatcgcagtaTATAAAATTTGAAAGATAGTGATGATAATAAGattctgaataaacaaaaaatgctacTATGGTTGTTCAATAATGAGGAGCACAAGCCTGAGGGGAAAAAAGCACTGAATGATGGGCCAAACGTAGAGCAAACCCAAACCATCTGAGACTAAATTAAAACCTGTCCATCTGCATTCATGCATTGTATGCAATCACAGGTAAATGCATTGATAATGATGGTAAATATACACTCTCTGATTGCAAAAAATGTACCTTGTCTGACAGGGCTGGCGAGGAGAAGCACATTGACCCGTAGCAAGGCGCGCAGTCGGCTTCTGCACCGCAAACTCCAGTCCTGCGGCTGGAGAAAACCACAGCGTCTGGCCTGAAGACTGGAAAATCAATAAGCAGCACTAAAAAGCCAGAAGCAGACGACAGCGCCGAGATTCCCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011056 lncRNA downstream 546680 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011055 lncRNA downstream 922905 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 1000283 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009826 lncRNA downstream 1536030 461129 ~ 463989 (-) True XLOC_005045
TCONS_00011054 lncRNA downstream 1591388 406187 ~ 408631 (-) True XLOC_005043
TCONS_00011059 lncRNA upstream 66473 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA upstream 66622 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00010791 lncRNA upstream 71532 2073022 ~ 2236997 (-) False XLOC_005069
TCONS_00010790 lncRNA upstream 71532 2073022 ~ 2236997 (-) False XLOC_005069
TCONS_00011060 lncRNA upstream 93946 2095436 ~ 2237093 (-) False XLOC_005069
TCONS_00009863 mRNA downstream 48735 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009862 mRNA downstream 48786 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009861 mRNA downstream 305966 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009860 mRNA downstream 442733 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009857 mRNA downstream 593539 1403806 ~ 1406480 (-) False XLOC_005061
TCONS_00009865 mRNA upstream 504029 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009866 mRNA upstream 504636 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009867 mRNA upstream 510389 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA upstream 510437 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009870 mRNA upstream 778700 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009859 other downstream 509431 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 1377730 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 2284876 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2294059 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2296367 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2296737 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 3398190 5399680 ~ 5418340 (-) False XLOC_005137