RNA id: TU186722



Basic Information


Item Value
RNA id TU186722
length 3670
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC122362588
representative False

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15035383 ~ 15047893 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CGCGCACAGAGCAGAGACGGAGACGCGAGTTCACGTCAACATCAGCGGCTACGAGCAGGAGAGCATGGAGCTATCACTGATGGCAGCCCAGCATTTGCAAGCGGTCAGTGGGGCCTTCATGGATTCTCCTTACAACGGCAACGCGTCTCTTCAGACGTCCACATCCAACCTCAACACCAGCTTCTCCAGACCGGCGGAGCAGGACGAGGAGGGCAAGTTCTCCAGCGACGCCATCTGGCTGTGGGTGGCTGTCATTGCAACCATCGGCAACATTGTGGTGGTAGCGGTGGTGTGCGCCTGTGCCTTTTAGACCCCGTAGTCTGCAAGAACACCGCCTGAACTCCTGACCCCTCACCCACCTGCACTTAGCACACTTTGTAGTATGCAAGCGACACCCTCCTTCCTCCGTCCTTCAAAAACGGCCCCTGTGAGTGCATTTAAAGGCAGTCTATCGATTCCTGTTTTATTAGCACTTTATCTGTTAAATAACAGCTCAGTTTATTTGGTTTGCTTGGTTATATAAGTCAGCATTACACAACATCTGTCAACTGATGATTAACACGATCGACCAAATCTATGGGACacgtgtgcgtgtttgtgtgagtCGGTTCTCGCTAAATCAGACAGATGGTGGTTGTCTGACGGTCGACGCATTTAGCATGATTTAACTCGGCTTCTGGTCATTCTGCCCAGTTCTCTCCGCTTCTGCCTTTTCTGGTGGAGTCCACATAGTTTTTGTCTATTTAGCGGCGATATAGCACCAACACGTGATGCATGACGACATATATTAGCTGCAAGTGTGAGAATGTGTCCAAAATAGTGCATTTAACTGAGAGAAATGACCGATGCACTGACCATGAGGTTTTAAGTGTGCAGCTCAGGATTTTCTCTAAACccacactgaaaaataaattccCTAAAATTTACGGTAAAAAACTAGCAGCTGTGGTTGACGAAATTCTACGGTAAAAAAATGCGGTAACACCGTTTTTGGTTTTACGttcaatttacagttaaatatcatcattttattaattgatataatgttaatataccgaCCTATTAAAGTAGTGAAGTCTGAACCAAAGCCCagcacaagcagcttttaaataataacatatacagAAGGAGTTACTAAGCACCATCACGGTGAGCCTCATTAAAACTGaaacatgcaataaacattaatttaacaacattagatatAACATACAATCCAAATAAACATGACTTTtaagaaaactaaaaagaaacatagtgaatttaaaaaaaaaaaacatcaaattgaaataaaatttgaaatgcagtgCAGGGAATTCTGAGAATGTGAATTCCGGGTTTTCCCTGTAACTTTTACGGGAATTTACCGTTAACTATTTAACAAGTTTTTGCTGTGGCATTTTCACAGGTTTTGCAGGAAATGAAAAAGATGTTGGCCTCACTGGACGCAGGGTCtaaatttgttcaaattaatgaaataattaggatcgtaaactaaaaatatcacaGTGGCATGCATAGAATACCCCAGTAATTAcgctaaaatatataaaaatatattcggtttacaaaatattcataaaacgAACAAGAACAAAGAAAATCTTCATTATTATACATCATTTTTGTAGCGCACATAGGCTGATAGTTTTCTTTTATCCATTCTAAAAGCATTCTTTTTTCAATTCCATCTACTCATTTTCTTATTCATTCACTTATCAGTTTTTGTGCTGCTTTAGTAAATCATAATACTAACCAATTACCGGTTCAGAAGCCCACGCTCTCCCTTATAGCTGGGTGTGTTTAACACAGTCTcttgtgttgttaaaagaaACATCATTGTGATAATATTAGTGCTTGAATCTCCCCGAATACCTTCTTCTGTGGGTTACAGACATGCCAGCTCATTAATTCAATCAAAGCTCGTTTTTCAAAGCCcaaaagtcttttatttttgtactgttgaCGGTCCACAGAGTTACTAACGGTCCGCCGGATCTCTGAACCGAGACGTGACCTCAGTTCCTGTGCAGTTAACCAGAGCGTGCAGGAGAGCTTCAGGTTCAGAGGTTAAAACACTTTCAGCATGCGGTCgctctttattattaaaacgcGGGTGAACTCGTGGGTTTCGGTTCAGGGTTGATGTTGTGTGAACTCTGACAGCATAAACCCTCTTGCACGATGTTGCCTCAGGGTCTCGGCAAACACACAGATGAATATAGAATgggaataatatttaataatgatgtGATGAGATTAAGTAAAccggtgaaaaaaaaaaaaaaagaaagctgtttCTCAGCCTCTATATGAAGGATGCGCGTTTTTCGTGCTACAGAAAACGGAAAAAGATCATGAATAATGTCTGTtagtgaatgtttttatttatgaataacaATACATGTTACATTATGGAATGGATATGGATGAAAAGAATGCTCTTTTATCGTAATATGTGAGCATATACAGTACAATATATAAAccgttcagatgcaaaagcgtCATCTGAATttttagtatgtttatcagGCTCCTGTGTGCAGGTTCAGTCATTTGAAAAAGAACCTATTTATTGCCATGAAAGCTTAAATGACTGAACCTACGCACAAAGCgctcattttaaatgaagatttcaaatgcaaaatatatttaacccCAAAATATTTTGGGTTAAGGAATTAAAGGCTGTCTCTAAATGTCAGATTTAGTTGCTCGCGATCTCCTTCAGGAGTTTGGCAGCGGGGCTGTGCTGTTTTTCTGGCCGTGGTTTGATCTCAGAAATGTGGCACAGCCCGGTTTAACTCGGTTTGTGTGCTTGGCTCCGGAGTCAGTGGAGACATAGGTGCCCATCACACACTCATCAACACCACGACGTGCCTTAAAGTGCATACAGCCGAGCCGGAGGGGAAAGATCCGTCTCGTCTGGAGATtgaaaaagatgcatgtttCGGCCTGAAGGACGTTCGCGTTAAAGCGTATTTTCTGGAGAATGAAACGCTTTAAGACGCTTCGTTTGCCTCAGAAGACACAGAAGTGGACGGCCTTCGAATGACTTTGATTGGCAAGCACTGGAGAAATCATGACCTTAAACCTTTAATGCGCTCTGCGTGTCTGCAGATGTTAGGAGTagaatgaatctgtgtttttttccctcgtATTTCGCAGCTGAATCACAAAATGCGTTCCGTAGTTTGGTCACGTGtgggaaaaacatttttaatgtttaaatatttaaatgataaaaatgatcatATGCATCTAATTGTGGACAGTGgttgatgcattaaaaacaagtgCGTAGTTGatgaaatgtgtaaatgtattgtatataaatgGAGGAAATGCACTTTATTCTCAATATAGCGTACGTATGCGTGCGTGCATATGAAGGGATATGAATGAAGCGATCTGTAATTTATGAGCGAGTATCACGGGACGCTCACCTGACTCCAGCACAATACACCGCTGCTAAAAACTCCAAGCAGTTAATCTTCACACGTTCTACCGCTCGACGTATCAAATGAAACCGTGGAAACATGTGCATATTCTTCTATTGCTTAAAAAATAGCAGCCTAAACCGCACAGGATGGCATCGATGTAACCGTTTGGATCATATAAAAACAACGTGTCAGAATGTGTCTCATTCATCtcttcacaaaacattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186586 lncRNA upstream 50635 14932321 ~ 14984748 (+) True G126347
TU186584 lncRNA upstream 97749 14936925 ~ 14937634 (+) True G126345
TU186590 lncRNA upstream 125226 14909829 ~ 14910157 (+) False LOC122322993
XR_006246940.1 lncRNA upstream 291939 14740786 ~ 14743444 (+) True LOC122323060
TU186500 lncRNA upstream 564368 14470760 ~ 14471015 (+) True G126285
TU186725 lncRNA downstream 18469 15066346 ~ 15066577 (+) True G126458
TU186908 lncRNA downstream 713086 15760963 ~ 15820330 (+) True G126591
TU186927 lncRNA downstream 777550 15825427 ~ 15828353 (+) True G126605
TU186957 lncRNA downstream 951575 15999452 ~ 16003818 (+) True G126626
XR_006253180.1 lncRNA downstream 1010657 16058534 ~ 16058974 (+) True LOC122362955
XM_043264968.1 mRNA upstream 114360 14911044 ~ 14921023 (+) True shkbp1
XM_043264969.1 mRNA upstream 114360 14911147 ~ 14921023 (+) False shkbp1
XM_043216605.1 mRNA upstream 125242 14906616 ~ 14910141 (+) True LOC122322993
XM_043264627.1 mRNA upstream 133976 14871768 ~ 14901407 (+) True ppp1r37
XM_043216812.1 mRNA upstream 185007 14843211 ~ 14850376 (+) True bmp16
XM_043264103.1 mRNA downstream 4167 15052044 ~ 15064838 (+) True si:ch211-136a13.1
XM_043216733.1 mRNA downstream 18985 15066862 ~ 15072223 (+) True yif1b
XM_043216734.1 mRNA downstream 18986 15066863 ~ 15072223 (+) False yif1b
XM_043265083.1 mRNA downstream 385079 15432956 ~ 15442131 (+) True dusp8b
XM_043264689.1 mRNA downstream 401464 15449341 ~ 15482697 (+) True mob2b
TU186589 other upstream 125707 14909198 ~ 14909676 (+) False LOC122322993
TU186588 other upstream 126900 14907267 ~ 14908483 (+) False LOC122322993
TU186575 other upstream 207091 14826881 ~ 14828292 (+) True gemin7
TU186297 other upstream 1094014 13940095 ~ 13941369 (+) True G126146
TU186336 other upstream 1122583 13909564 ~ 13912800 (+) True G126175
TU186953 other downstream 904142 15952019 ~ 15953653 (+) False LOC122362954
TU187042 other downstream 1005001 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other downstream 1005252 16053129 ~ 16055627 (+) False LOC122362745
TU187112 other downstream 1216881 16264758 ~ 16271267 (+) False LOC122362750
TU187265 other downstream 1769854 16817731 ~ 16818399 (+) False G126820

Expression Profile