RNA id: TU186908


Basic Information

Item Value
RNA id TU186908
length 3349
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G126591
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15760963 ~ 15820330 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacccacacacacacacacacacacacacacacacactcacacacacacactcacacacacacacacacacacacacacacacacactcttgtcaGCACGGGACACATTTCTTCTCACAGTCGAGTGAAAACGAAGCTCCTGACGACATTAAAGGCAGCAGAGATCGCTCTCCTCCATCCCTCATCCTTCAGTCTTCATTTCTGTCCTCTTTTCTCTCGTTCCCCAAAGGTTGTACTGCCAGCCACGTTCAGAACCTCAAAACGCTTCCTTCTCATCTAAAAgcatgcctgatctcgtctgtTTGCATACGATGAGCAGAAAAGTCCCGTTAAATCTCAGTGTTAATCACCAATAAGCCGTCTTTTCAATCCCTTAGATAATGTCCTAAAACAAACTTGATATTCCGTCACACAAGCCAATATATGCTTTTTATTGCATGAATTCATTCTCAAATCTAGCTTCAGTTCTGAATGCATCCGTAGTTTTTTTCAACATCGTACAGAAATACAAACAGGatcaacaattaaaaataaaattctctagaagcttttttttcttcttcttattccTCTTTCAGTGATTAGTTGCATTATTATTcaatcatattaataatcatcTTAAGAACCTGTTGTGCGATGGAGAGGTTCAGGGATGTTAAAGCTCCTTCACGCAACCAACGAGAGAGTAATGTTTCTAATGTTTTGACTCTTTTGCATCTTTTGCCAGTGAATGATTTTGATGATATCTGACCGATTGCTGTAGGACACTTTCTATCTCCAGGGTCCCgtgtttctcttctcttcttctctatAGCGTGCAGGGTGCTCTCTTATTAAAGCATGTTTCTGCTGAATGACATCTAGaacggtctctctctctctctctcctgaacCCGtctgacagaaacacaaacGCATTTCCAGCAAAAACACGCCTCGAAGCTCCTGGGGATCCACAGGTACTGAGAGGTTCGCCGCGGAAAGACTGACAATAAACACGGCGGCTCATAATGAGAGCGTTCAGAGAGAGTAATAAGACGAAGGACACGCAGCAATAAACACTGGAGTGTGGATGAAGGAGAGACAGGGTACCATCGGtcctcttaaagggacagtcaacccaaaaaaagaaaaggatgtcgtcatttactcacgATCGTGTCATCTTCATACGAAGGATTAAAATGTGCATGAATGAGATTCGAGGTCGTGTGTACTACTGTTTGGGAGCGATGCAGGAAATAAATACAGGGATCGGGGATGCATCGTATTGAACAAAAGCCACAGTAAATAGATTTATAATGTATCCATAgatttctgttcttttgaactttctgtgaATCCTGACAGTCTTCGCCAAAATATTAAGCGGCGCGACTGTTTTCCAGATTttgcaaacaatcaaaaaagtttgtcgagcagtaaatcagtgtattattctgatttctgaagatcacgtgactctgaagactggagaaattatgctgaaaatcacagaaataaattactctTTAACACACATTGACATAGAAATCAGCTATTTTAgtttgtgaaaatatttcacaattgtacagctttttctgtatttttaattcagccttggtgagcggAAGAGACATGAACTTTAAAAATGCCCccaaatatgtatgtatttctgCACAGGCCTCTTTCCTCATTAACTCTCACTGCATGGAAAACAGCATAGAAGACATATaagaggtgagtaaatgatgacgattttcattttttggagGTGGGACTCtgcaggtgaaaaaaaaacatgagacgATGCATGAGCTTAAACCAATCACACAGGTTTTATATCTGTACCACAACCGTGTCGGCCGTCATGCTTTGAACGAACACTGAGAGACAAAAAACAATGACACAAAAGAAACCGGATGAAGGCAAACGAGGACAACCAGAGTTTAGAGGAAGGGTCAGGACAAATCTGTGCTCCGATTGGCTGAGCTGCTTTAAATGGTTTCCATGGCAAACAGTGTCCAATCAGAGATTTCAGGCGGGGGACAATTGCAAAGAAACGTAAGGTCagatatatcacacacacacacacacacacacacacacacacacacacacacacacacatcgtcTTAGCTGGACTAAAACATCAGCGATAGCATTATTCTTTTTTCTCCATAATAAATTACAGCTACTAAACATTCATCGAGAGCAGAACGACAGCGTTCTccaagtgttttctttttttttaaaccatgcaTTGACAGTATAAGGCTTTAACCAAACAGAGTCACAAGAGCGTAGAAATCAAGGTCGGGTGAAGAAGAACGAGCTATTCTCGAACCAAAAAGGCAAAGTTTGGTGGGAAATCGAGACGGAGAGAGTTAAACCGGTCGATATCTGCAACGTCACTGTACCTTATCGACCGGCGGATGGATGAACGAAATTGATTTTCTGAGGTAGACAATACAGGAATATTTCATTCTCCTTGGTCAAGATCACCCTAAACTCTGGTGTATGAAGTGACTCTCTCTGAACGTGAAACTAAAAGGTCCTTTTTCACACTGTTCTGCATAGCCGCCTGTCCAAGTACACTTAAATGGCGCCATCCATCACTTCTCCTCTCGCTCTGCGCTATTGCTGCTATTCTAAGGGACCTGATGAATCTGTCCGCACACCAGCGATCGCTCTTCACATCCGTGGGTCTACCCGGAAAACGCCAGACACTCGATTTCAGTCtttttggggtttatttttctgtatgatCTGAAAATGTTCACACCTAACGATTAATATTTCACTGAACCGACCGACAATACCGTCACAGAAAGTCCAGGCGATGAGGTTTGGGTGCAGTACGATTCAGCGCCTTCGTCCGGAAATCGTAACTATGAAGATCCGGGCGGTCTGAGCGACGCTTGGGGTTTCTGTACAGTGTGTAACAGTGGAGATAAAGTGTGGGTGCAGGTCTAAGACTAAAAAGATCCACTCGTGGGACGAAAACGGGTCTGGAATCACGAAGAAGGCATTCGAAGGACCTGACGCCGCAGAGAAACCGCTTTCCTGAAGACGAGACAAACGAGGCGTCCAGGAGTCTCCCTTTTTGCCTTCAGGACCTCGGTAGCGCTTGTGGTCTTCGAGCAAAACGTCCCGCTTCCGCAGCGTTTCTGCCTCTAGAGCGTCCGGATGGCCACGGGGTACAGCAGGGACATGTGCTCGGCCCCTTTGATCGGCAGCTTGCGGCTGGAGTAGAAGTGGATGATCTCGGGAACGCTGTCGAACAGGCAGCTGTTCTGACCCAGCACGTACTTGTTGTCTTTGGTCCGAGAGAGCTTCATGTGCATGAACCCTTGACTGCT

Function

GO:

id name namespace
GO:0048864 stem cell development biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process

KEGG:

id description
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186725 lncRNA upstream 694386 15066346 ~ 15066577 (+) True G126458
TU186722 lncRNA upstream 713086 15035383 ~ 15047877 (+) False LOC122362588
TU186586 lncRNA upstream 776215 14932321 ~ 14984748 (+) True G126347
TU186584 lncRNA upstream 823329 14936925 ~ 14937634 (+) True G126345
TU186590 lncRNA upstream 850806 14909829 ~ 14910157 (+) False LOC122322993
TU186927 lncRNA downstream 5097 15825427 ~ 15828353 (+) True G126605
TU186957 lncRNA downstream 179122 15999452 ~ 16003818 (+) True G126626
XR_006253180.1 lncRNA downstream 238204 16058534 ~ 16058974 (+) True LOC122362955
TU187074 lncRNA downstream 388254 16208584 ~ 16211583 (+) True G126711
TU187083 lncRNA downstream 446684 16267014 ~ 16348903 (+) True G126716
XM_043263919.1 mRNA upstream 90806 15613403 ~ 15670157 (+) True insyn1
XM_043263918.1 mRNA upstream 90806 15613403 ~ 15670157 (+) False insyn1
XM_043263920.1 mRNA upstream 90806 15613403 ~ 15670157 (+) False insyn1
XM_043264241.1 mRNA upstream 242046 15511535 ~ 15518917 (+) True scamp5b
XM_043264689.1 mRNA upstream 278266 15449341 ~ 15482697 (+) True mob2b
XM_043264773.1 mRNA downstream 130652 15950982 ~ 15953617 (+) True LOC122362954
XM_043264305.1 mRNA downstream 135575 15955905 ~ 16038911 (+) True zgc:158464
XM_043264306.1 mRNA downstream 226739 16047069 ~ 16055627 (+) True LOC122362745
XM_043264307.1 mRNA downstream 243637 16063967 ~ 16075424 (+) True LOC122362746
XM_043264766.1 mRNA downstream 255141 16075471 ~ 16085414 (+) True LOC122362951
TU186589 other upstream 851287 14909198 ~ 14909676 (+) False LOC122322993
TU186588 other upstream 852480 14907267 ~ 14908483 (+) False LOC122322993
TU186575 other upstream 932671 14826881 ~ 14828292 (+) True gemin7
TU186297 other upstream 1819594 13940095 ~ 13941369 (+) True G126146
TU186336 other upstream 1848163 13909564 ~ 13912800 (+) True G126175
TU186953 other downstream 131689 15952019 ~ 15953653 (+) False LOC122362954
TU187042 other downstream 232548 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other downstream 232799 16053129 ~ 16055627 (+) False LOC122362745
TU187112 other downstream 444428 16264758 ~ 16271267 (+) False LOC122362750
TU187265 other downstream 997401 16817731 ~ 16818399 (+) False G126820

Expression Profile