RNA id: XM_043264306.1


Basic Information

Item Value
RNA id XM_043264306.1
length 2442
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC122362745
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16047069 ~ 16055627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttctctctctctttctctctctctctctcacacacacagaagataGAAAATGAGTGAGGATGTATATGAGGTCCCCGAGGGGACGGAGTATCGTTATCTGGTGCAGGACGAAGAAGAGGAGCAGATACAGTACGTCCGTCGCCACTATGTCAGTCCATTCCTGGTGGTGTCGCGCAAGTGCATGTTCCTCATCGGCTGTGGCGTGATCGCTCTCCTCTCTCTCGCGGGATACCTGGCTTATGTGGCTGAGACTCCTCCTCCAAGGGTGGCAGAGGTGCAGACCGAGTGCGGTCGGCTGCGAGGGAGCTGGAAAGGCGGAGCTTATTCCTTTAAAGGCATCCCATACGCAGTGCCGCCGGTGGGTGAGCGTCGCTGGCGACCCCCGGCGGACCTATTTAAGGCGGGACAGTGTTGGCGGGGCGTTTACGACGCCACTCGATTCCGTAGCATCTGTGCGCAAGTGCAGCCCCTCCGAAAAGACGGACAGGTCATGGGACAGGAGGACTGTCTGCATCTCAGCGTCTGGACGCCGAGCCTAAAGCCCGCCAAACCACTTCCAGTCATGGTGTGGATCCACGGAGGGTACCTGCACATGCTGAGCGGCCAGGAGAAAGGATACTCGCCCACCGAAGAGCTGGCGGCCCGCACGCAGATGGTGTACGTCAGTCTGAATTACAGGCTCAATGCTTTCGGCTTCATGGCTCTGGAGATGCTCAGGGAAGGCTCTCCCACCAACTCCTCAGGGAACTATGGCTTCATGGACCAGATCCAAGCACTTCAGTGGGTCCAGAGAAATATCCATGACTTCGGTGGCGATGCTGGAAGGGTTACCATATTTGGTCAAAGCTCAGGAGGAACTTCAGTTTGGACTTTGATGATGTCTCCACTAGCCAAAGGACTCTTTCATCGCGCGATAGACATGAGCGGCTCATATGTGTACAACGCCTCTCTGGAGTCAGCAGAAAGAGACAACTTAGAATTCCTGAGAAGAACCGGCTGCAAGAACGCCATCTGCCTGAGAGATCTACACATCGCTCAAGTCCTTCAGGCAATCCCGTGGCAGCAGTACCCAGCATGGGCGGCCGATGAAATAATCGATCTTCCGGTCAAAGGTGTTTTTATTGGCCCAGTGGCAGTCGTTGACAACTATGTTCTCAAAGCTCCTCCGTTCGAGACCTGGGAGAAGGGTGTAGCCGGAACCTATAACGACGTCCCGTTTGTGGTTGGAACAACCGAACAGGAGACAGATTTTGCCTCCGCCTCCAAACCTCTATATGACGGCCGCTTCATCAGTAACTATAGCAACACAGTAGTTGTCAACATGGAGTATCGTCTTGGTGCATTTGGCTTCTTAGTCACAGGCAAAGATCCCGAGAGCTCCGCAGTGGGGAATTATGGGATTCTAGACCAGCAGGCAGCACTGCGCTGGGTCCAAGAAAACATAGCAGATTTTGGAGGAGACCCAAATAAGGTTACTCTGTTTAGCGAGAGCGCTGGTGCCCAATCAGTGTGTCTTCATCTGATGATGAGGAGCAGCGAGTCTTTGTTTAGACACGCAGCCATACAGAGTTTACCATTCTCTTTACCACTGAAAACCagATGGGATGCTGTGAAACTGGGCTGGGATTTTGCTAAACTGACTAATTGCTCAGCATTCGATCTGCCCTGTCTGCGCTCTCTCAGCTCACATGACGTGCTCAACGCCCAGGTTGAATCAGGTTCAAAGATCATCAACCCCTTCCGTTTCCTGGAGGTCTTTGAGACATGGGGGCCGTTCATTGATGGAGAACTGATCCGGgaacagccaatcacagcctTCCAAACAGGCCACTGGCAGAGTTACAAGCCTGTCATACTTGGTACAACCTCAGAGGAAGGGGTGACCTTTGTGTACAACATTTTCAACCGGTCCGTATCAACACTGGAATGTGTGCTCTATACTGCCGCCATCTTTAAGCAACATGCGCTTAAAATTCTGCACAAATACATTCCTTTCTACCGAGACCAGGACAGAAGAGTGATGCTTTCTCAAATCGTCACGGATTACATGTTTCTGTGTCCAACTCGATGTTCTGCTCGTTCTGGAGTAAAAGCCGGCGGAGCCGTTTGGTTGTATGTATTTGACCACGCTCCGTCCGATCACAACATATGGGAGGGGCTTCCGTTCTGCTACAATCATACCTGCCACGGGGCGGAGCTGCCCTTTCTCTTTGACTCCGCCCCCAGCACCAACTTCACACTTACGCCTGAAGAGACCCTTCTGGCAAATCGGATGGCGTGTTACTGGGGAACGTTCGCCCATACGGGGAACCCAAACTCTCGAAGCGAACAGACACACTTCTGCTCACAGCAGAGACTGCCTGTTTGGCCTCGGTACACGGCTTCAGAGGGCTGGCCCATCCTGAATCTGACTCTACCCTCACACCCACAGCACGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186957 lncRNA upstream 43251 15999452 ~ 16003818 (+) True G126626
TU186927 lncRNA upstream 218716 15825427 ~ 15828353 (+) True G126605
TU186908 lncRNA upstream 226739 15760963 ~ 15820330 (+) True G126591
TU186725 lncRNA upstream 980492 15066346 ~ 15066577 (+) True G126458
TU186722 lncRNA upstream 999192 15035383 ~ 15047877 (+) False LOC122362588
XR_006253180.1 lncRNA downstream 2907 16058534 ~ 16058974 (+) True LOC122362955
TU187074 lncRNA downstream 152957 16208584 ~ 16211583 (+) True G126711
TU187083 lncRNA downstream 211387 16267014 ~ 16348903 (+) True G126716
TU187084 lncRNA downstream 211387 16267014 ~ 16364205 (+) False G126716
TU187097 lncRNA downstream 299604 16355231 ~ 16361646 (+) True G126722
XM_043264305.1 mRNA upstream 8158 15955905 ~ 16038911 (+) True zgc:158464
XM_043264773.1 mRNA upstream 93452 15950982 ~ 15953617 (+) True LOC122362954
XM_043264776.1 mRNA upstream 232216 15810671 ~ 15814853 (+) True ubl7b
XM_043264777.1 mRNA upstream 232216 15810671 ~ 15814853 (+) False ubl7b
XM_043263918.1 mRNA upstream 376912 15613403 ~ 15670157 (+) False insyn1
XM_043264307.1 mRNA downstream 8340 16063967 ~ 16075424 (+) True LOC122362746
XM_043264766.1 mRNA downstream 19844 16075471 ~ 16085414 (+) True LOC122362951
XM_043264308.1 mRNA downstream 34463 16090090 ~ 16115844 (+) True LOC122362747
XM_043216900.1 mRNA downstream 60364 16115991 ~ 16118762 (+) True LOC122323208
XM_043216901.1 mRNA downstream 60366 16115993 ~ 16118762 (+) False LOC122323208
TU186953 other upstream 93416 15952019 ~ 15953653 (+) False LOC122362954
TU186589 other upstream 1137393 14909198 ~ 14909676 (+) False LOC122322993
TU186588 other upstream 1138586 14907267 ~ 14908483 (+) False LOC122322993
TU186575 other upstream 1218777 14826881 ~ 14828292 (+) True gemin7
TU186297 other upstream 2105700 13940095 ~ 13941369 (+) True G126146
TU187112 other downstream 209131 16264758 ~ 16271267 (+) False LOC122362750
TU187265 other downstream 762104 16817731 ~ 16818399 (+) False G126820
TU187381 other downstream 1018567 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 1074295 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 1074295 17129922 ~ 17164757 (+) False LOC122362575

Expression Profile