RNA id: TU187220


Basic Information

Item Value
RNA id TU187220
length 358
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G126794
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16746689 ~ 16863742 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTAAATAGTCTTTATTGCAACACAAGACACTTCTACACCAAACCATCATTTAACATGCACTTCACCGAAGCCTTCGTCTCATCCCATCCCGCTCGATCCCTCAGACTCTTCCTCCTCGTCCTCAGAAGTCTTCCTCGGCGCTGCGGCAGCGTGACTGTCTGAGGAGCGTCAGTCTCTCCATCACCTGCTCCACGCTCAGCTCTCCATGCACTCTGTTATCTCTGGTCCTGACATTGACGCTGCTGGCGGCGCGCTCCTTCTCTCCCACCACTGCccaacaaacacacatcagaacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187274 lncRNA upstream 1726 16802772 ~ 16803493 (+) True G126826
XR_006253127.1 lncRNA upstream 65849 16736723 ~ 16739370 (+) True LOC122362527
TU187249 lncRNA upstream 81745 16723216 ~ 16723474 (+) True G126815
TU187247 lncRNA upstream 85089 16719496 ~ 16720130 (+) True G126813
TU187212 lncRNA upstream 131913 16672536 ~ 16673306 (+) True G126792
TU187325 lncRNA downstream 73359 16937101 ~ 16937486 (+) True G126854
TU187327 lncRNA downstream 79077 16942819 ~ 16943240 (+) True G126856
TU187329 lncRNA downstream 80621 16944363 ~ 16944728 (+) True G126858
TU187330 lncRNA downstream 81550 16945292 ~ 16946656 (+) True G126859
TU187331 lncRNA downstream 81652 16945394 ~ 16946656 (+) False G126859
XM_043264649.1 mRNA upstream 15546 16780682 ~ 16789673 (+) True larp6a
XM_043264914.1 mRNA upstream 87061 16705581 ~ 16718158 (+) False myef2
XM_043264913.1 mRNA upstream 87061 16705585 ~ 16718158 (+) True myef2
XM_043264433.1 mRNA upstream 127153 16618170 ~ 16678066 (+) False fbn1
XM_043264852.1 mRNA downstream 95082 16958824 ~ 16971364 (+) True LOC122363001
XM_043264314.1 mRNA downstream 203352 17067094 ~ 17069819 (+) True LOC122362752
XM_043264794.1 mRNA downstream 215317 17079059 ~ 17099562 (+) True LOC122362967
XM_043216503.1 mRNA downstream 440027 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 462224 17325966 ~ 17354848 (+) True unc13c
TU187112 other upstream 533952 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 749592 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 749592 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 851566 15952019 ~ 15953653 (+) False LOC122362954
TU186589 other upstream 1895543 14909198 ~ 14909676 (+) False LOC122322993
TU187381 other downstream 210452 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 266180 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 266180 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 440078 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 440078 17303820 ~ 17309158 (+) False LOC122322904

Expression Profile