RNA id: TU187379


Basic Information

Item Value
RNA id TU187379
length 1696
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122362575
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17129922 ~ 17171335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGGCGGCGCATCGCGCGCTCGCTCGTCTGTGCAGCGAGTTTGAGTTCCGATCCTcttcttcctcacacacacagagagagagagagagagagagagagctgaaccTGCAGACACTTTCGAGCGCGCACCGCAGACGCGTCCACACTTCGCGCTTTCTCTTCGCCGAGACTCACAAAGGAAATACATCCGACCAGACGCGCGGAGACGCGCCGAGACCGAACCGAGCCGAAGCGGATCCGGAACCGGATCGGGCAACAGGAGGGTCTCGAACACAGTCCAACTGGATGTTGCGTCGCGCTTTCCGTGGTGCTGAAATGATCTGATCTGCTCTCAGTCcgaatcatcatcatcatcatcatctgcacAGCGGTGTCTTCGCTTCTGAGCTGAGATGCTCTTCGTGGATTGTAAGATGGTGGACGTTCTTCGCGGTCGGAGGAGGCTGCGGGTGTCCGTCTGCAAGCCGCCCTGCTCCTTCTGGTTTCTGCTGCTGTTCGGGGTCGGAGGACTCGTTCTCTTCATCCATCTGCAGGATCTGTCCGATATGGTGCTTCAGCAGGCCCCAGAGAATCCCGCCGAAATCCGCTTGTATCGGAGAAAACGCTAGCAGTGTGAAGCCTCCCAGAATGCAACAGGCTTCCGGTGATTCTCGGGGTCAAAGGCTGTCGCTTTCGCAATGCCATAAAGTCATTAGCACgggaaaaacaaatgtaaaaagcgGGAAGTCGAGCTTCAGTAATCCGTCCATCTGTCTGTGTTCGTGAAACTCAGTTTAATTAAAGCTCACTGATGACCCTCAGCTCGGACTCAGACGACGCTTCTCAAACAGTCTTCGGTTTCTCCTCCTTTCATTGGACCGCCTCGGCTCCGGAGGATCTGTAAACACAGACGTGAGCAGTTTGTCCCTAATGTGAAAACAGCAGACGAGTATTGACAAGCGCTCCACAAGGTGTAGATAACAAACcccagcgtgtgtgtgtgtgtgtgtgtgtgattagtTAGTCTTGCCAAGTGTAGCAGAAACTCTGCTTTATTTTGACGCTTATTATTGTTGGAGCAGGTCAGCGTCCACTAGAGGAGAACAACAGTAGACATTTAGGAATgcctttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctttgggACCTCAGTTTGTACCATGTTCATCCGAAGTGCAGCCATTCTAAAAGCAATGATCTTtttcaagaaaacatttaaatgagtgtgagtgagtgtgtaaatgtgtgcttgtgtgcgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagtgagtgagggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtaagtgtgtgcttgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgcgtgtgtgtgtgtgctcatgagtgtgagtgagtgaggtgtgtgtgtgtgtgcgtgtgtgtgtgtgcgcatgagtgtgagagagtgtgtaagtgtgtgcttgtgtgtgtgtgcgcatgagtgtgagagagtgtgtgtgtgtgtgctcatgagtgtgagagagtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187370 lncRNA upstream 96582 17031550 ~ 17033340 (+) True G126881
TU187363 lncRNA upstream 106552 17021386 ~ 17023370 (+) True G126879
TU187356 lncRNA upstream 112397 17015532 ~ 17017525 (+) True G126875
TU187346 lncRNA upstream 114597 17013758 ~ 17015325 (+) True G126867
TU187393 lncRNA downstream 670 17172005 ~ 17172305 (+) True G126893
TU187407 lncRNA downstream 85476 17256811 ~ 17257363 (+) True G126903
TU187411 lncRNA downstream 106871 17278206 ~ 17278585 (+) True G126906
TU187696 lncRNA downstream 239350 17410685 ~ 17411593 (+) False G127098
TU187697 lncRNA downstream 239531 17410866 ~ 17411593 (+) False G127098
XM_043264794.1 mRNA upstream 30360 17079059 ~ 17099562 (+) True LOC122362967
XM_043264314.1 mRNA upstream 60103 17067094 ~ 17069819 (+) True LOC122362752
XM_043264852.1 mRNA upstream 158558 16958824 ~ 16971364 (+) True LOC122363001
XM_043264457.1 mRNA upstream 300568 16819287 ~ 16829354 (+) True ulk3
XM_043264649.1 mRNA upstream 340249 16780682 ~ 16789673 (+) True larp6a
XM_043216503.1 mRNA downstream 132434 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 154631 17325966 ~ 17354848 (+) True unc13c
XM_043216683.1 mRNA downstream 253819 17425154 ~ 17425977 (+) True ompa
XM_043216533.1 mRNA downstream 265816 17437151 ~ 17440065 (+) True LOC122322924
XM_043216880.1 mRNA downstream 282819 17454154 ~ 17455657 (+) True serp1
TU187381 other upstream 52763 17074194 ~ 17077159 (+) True G126884
TU187265 other upstream 311523 16817731 ~ 16818399 (+) False G126820
TU187112 other upstream 858655 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 1074295 16052878 ~ 16055627 (+) False LOC122362745
TU187389 other downstream 132485 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 132485 17303820 ~ 17309158 (+) False LOC122322904
TU187698 other downstream 239531 17410866 ~ 17411593 (+) True G127098
TU187881 other downstream 637339 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 712330 17883665 ~ 17887211 (+) True sdr42e1

Expression Profile