RNA id: TCONS_00010790


Basic Information

Item Value
RNA id TCONS_00010790
length 839
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id XLOC_005069
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2067963 ~ 2479931 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTAAATGGTCTCCACCTGTGTTTGAGCAGGCCTACCTTTCTCACGGTGAATCCCATGAAAGCAGAACACCAAAATGAGTTGTAATCGCGAATATAAACTGATCAAGAAACTCCTCAAGAGCAAAGCAAGAAAGTTTTTCCTCATTGTTAATTTAACATGAGTTATTTTGATAGTTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACATTGTTGTTAGTGAAAGGCATGCAATCAAGAAACTTGCCAATGGAAACTTTCAAAATGGCGGACGTCCACACCTGCAAACTAGTCTGAACTTCAACAGCAGATCGAGAAGGACAattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCCCATGCAGAGCGATCATAAACACTACAGTGCCTGCATCTGATGAGGAATCAGTAGAAGAACTAGGAACAAACCCTTCATCACAAGCACTGCAGGAGTTGGCTATTTTACAGGTAAGGTTTTATTTCCTCTGTGGTTCATTTTGAGATCGTATGGGATGGAAATAGTTGTATGC

Function

GO:

id name namespace
GO:0015808 L-alanine transport biological_process
GO:0050808 synapse organization biological_process
GO:0045202 synapse cellular_component
GO:0015180 L-alanine transmembrane transporter activity molecular_function
GO:0015193 L-proline transmembrane transporter activity molecular_function
GO:0022858 alanine transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011058 lncRNA downstream 71198 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011057 lncRNA downstream 71532 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011056 lncRNA downstream 619683 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00011055 lncRNA downstream 995908 1072485 ~ 1077114 (-) False XLOC_005057
TCONS_00009849 lncRNA downstream 1073286 995830 ~ 999736 (-) True XLOC_005055
TCONS_00011063 lncRNA upstream 2305 2239302 ~ 2479333 (-) False XLOC_005069
TCONS_00009864 lncRNA upstream 191303 2428300 ~ 2479931 (-) True XLOC_005069
TCONS_00009869 lncRNA upstream 342240 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00011064 lncRNA upstream 388672 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA upstream 408618 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00009863 mRNA downstream 121738 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009862 mRNA downstream 121789 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009861 mRNA downstream 378969 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009860 mRNA downstream 515736 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009858 mRNA downstream 667794 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009865 mRNA upstream 268522 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009866 mRNA upstream 269129 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009867 mRNA upstream 274882 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA upstream 274930 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009870 mRNA upstream 543193 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009859 other downstream 582434 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 1450733 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 2049369 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 2058552 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 2060860 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 2061230 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 3162683 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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