RNA id: TCONS_00011061


Basic Information

Item Value
RNA id TCONS_00011061
length 868
lncRNA type read_through
GC content 0.47
exon number 6
gene id XLOC_005069
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2067963 ~ 2479931 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCCTGTTGTCTGACTGACCTGCTTTACTCCAAACGAACGTAAAGGAAATAGTCACAATTACGATGGCCACTAGATTGTTTAAAAGTAAAGACAATAAACAAGTAGCCTAGTCATTTTCACGAATATCTTCTGTTTTCCTCGACCTCCTGTTGGAGCAACTATTGCATGCAGATTTTCTCAGTACTTTGGTTGAAAAGACTTGGAAATGTTCCCGCCAATATCAACACCACGTGCAGTGTGGAGTCAAACAGAGTCTCAGCAACGACTGACTACAAGCCGATCATTACAGGCCGTCTCTGATAAGGATCTTCCATGTGAATAATGCACAAAGCCTCCGGTGTTCTGGACATGTGGGTCCGGAGACTTGAGTTTTCAGCACCTGATGATGAACGCAGACCCCCGAGGCTCCTCTTTACCGAACACTGACAGAGGAAAAGCTCTCTGTTAACCCAAGTCTCACCTGATACTTCCTTGTTACCGCGAACACACATATACAGATGTGCTGAGTGACAGATGCGGCTCACTGTAATCAAACAGCAGCAGGCGCACGCTGACAGACGCACACTGGGAACCTGCTGCTGCCGCATACACACTGGGCGattgtaccaaaaagctgaggaccgcGGGCGGGATGAAATTACGAGAGTTTCTGGGAGAAACAACAAAATGGGAGGATTGCAGGAGATGGGTCTAAAATACAGGAGACTgttgggaaaaacgggagtgttgcaGGCTTCGGAAATCCCCACAAAGCATCAAAAGAGTCAGCAGTACATGCCCTGATACAAGTTTTCTTCAATCTCCCTCAGAGAAAGCGTGGCTCTCAAAGCTCTCGGATTATTCAACGTTCGCCAGCAGGACATCC

Function

GO:

id name namespace
GO:0015808 L-alanine transport biological_process
GO:0050808 synapse organization biological_process
GO:0045202 synapse cellular_component
GO:0015180 L-alanine transmembrane transporter activity molecular_function
GO:0015193 L-proline transmembrane transporter activity molecular_function
GO:0022858 alanine transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011059 lncRNA downstream 62918 2067963 ~ 2073187 (-) False XLOC_005069
TCONS_00010789 lncRNA downstream 62918 2068112 ~ 2073187 (-) False XLOC_005069
TCONS_00011058 lncRNA downstream 134281 2000636 ~ 2001824 (-) True XLOC_005068
TCONS_00011057 lncRNA downstream 134615 2000019 ~ 2001490 (-) True XLOC_005067
TCONS_00011056 lncRNA downstream 682766 1452900 ~ 1453339 (-) True XLOC_005062
TCONS_00009869 lncRNA upstream 99306 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00011064 lncRNA upstream 145738 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA upstream 165684 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00011066 lncRNA upstream 223424 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00009873 lncRNA upstream 376930 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00009863 mRNA downstream 184821 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009862 mRNA downstream 184872 1947593 ~ 1951233 (-) False XLOC_005066
TCONS_00009861 mRNA downstream 442052 1693014 ~ 1694053 (-) True XLOC_005065
TCONS_00009860 mRNA downstream 578819 1556147 ~ 1557286 (-) True XLOC_005064
TCONS_00009858 mRNA downstream 730877 1403975 ~ 1405228 (-) True XLOC_005061
TCONS_00009865 mRNA upstream 25588 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009866 mRNA upstream 26195 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009867 mRNA upstream 31948 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA upstream 31996 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009870 mRNA upstream 300259 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009859 other downstream 645517 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 1513816 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1806435 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1815618 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1817926 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1818296 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2919749 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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