RNA id: XM_043216610.1


Basic Information

Item Value
RNA id XM_043216610.1
length 5809
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC122323000
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17887967 ~ 17917268 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGATGTTCAgtgtagtttttaattattttctgtggGCTGGGCTATGTGGTTAAATCTTTAATCTGTCCCGCTGGATGAAAGTGGACACACATAGACTCTCCAAAGgactttttttcaggattctgcTCCCCCTTGCTGAGTTGCTCTCTATCATTGTTTCGCTCCGGCATTAACCACATTCCAGAGCGCCGCAGCACGGCCCGTCTCCCTCCGCGCATTCCTCTCACGCGAACGAGTCCCGAGCGAATCGTTTGATACGCGCGCGCTCGCCCACCTACGCGCCCGACGCCGCTCCCGTTTATCGAGAAATTCCCGGGGATTTTTGGGAGAGCCGGAATCGCTGGAAACGGCTTCGCGGGGACAATCGCGGAAAATCAAAGCGAGAAAATTCCTCCGCGCAGCGCGCCATTGACTGTAAAGACCTTTCAACTTTGCAAAAAAACCGAAATTGACAAACGTTCTCCTGAGTGGAAACTTTGTCACGACGACCGTATCGCCACGAATCGACAGGCGGGGATCGCGCACCGCGACGAAATGACGGCGGAGGACTGAGTAATCGCGAACAGGCAACGATGGTTCGCCTGAGGCGGCGTTTTTCCGCGTAAAATGCAGTTTGTGTTGTAGTTGACTAGTGCTCCGCGCGCTCGCCCGTTCAACTCGCCTCAGAGACGACATGGATGGATACGACGAGGATCCGGCGAGCAAACTGATGGAAAACCTCTCCATATTTGACGTTTATCAAGACGGGATGTACACGGAACCGAACCCCGACATGGAGAAAACTAAACGAATGAATGGCAGCTCCGCGCACGGGAACAAAGTCTACGGCGCGGCTCCCCTGCGCTCCGTCAACGGTAACCGACCCTCAGTGCCTCTGGATTTCTGTTCGCCGCAAAGGGACGCGGTTTATCCCGATCCCGACGCGTACTGCACCAAATCCGAAGTTGCCTTGCCGTGTTACAGCGGCGCGTCGGACCGTCTCAGGAGATACACGCAAGCGGAGGTGCAGGCGCACCGGTACAGCGCCGGATGCGCCTACGACGCGCTCATCCTCGGGAAGCAGGTGAGGAGCAACAGCTTATGCGTGGCCACGAGCCCCCGGTCCAGTTTGGCTTCGTCTCACTCGTCGCAGGACCAGAGCAAACACACCAGCCCGAGGTCGAGCATCAGCAGCCCGCGGTCCAGCCTAGTGTCGCCGGGACAGGAGAAGTACTGCGAGGGCAACGGCGCGATCAGCCCCCGCTCGAGCTACGCCAGCACGGCCAGCGACACCAGCAAGCACTCCAGCCCCAGAACCAGCCTCAACAGCTACGACTGCGGGAGCAAACCGAGCAGCAACCGAACCAGCGGCATCAGCATGGGCTACGACCAGCGGCACGTCAGCCCCAGATCTAGCACCACGAGCCCGCGCTCCAGCTACTCTCCCGCGGGGAACCACGAGCAGGAGAGCGGCGCGGTGCACGGCATCCCCATGGCCAGCCCCCGGTCCAGCATCTGCAGCCAGgacggcggcggcggcggcggggGAGTCGCGCGGATCGCCgtggcggcggcggcggcggcggcgaaCTGCGTGGTCAGCCCCCGCTCCAGCATCTCTAGCCACAGCTCCAGGAGTTCGCGGAGCTCCATGAGCGCGTACCCCGAGCTCCAGCACTCCATGCTGGGACCCGGTCTGCCGGAGGACGCGCTGCTGCAGGACTTCACGGAGCCGAACGGCCTCCACAGCAACCGCGTCCACCTCCAAGCGTTTTCCGAGCCGCAGCAGCAGAATTCAGAGGTCAACGTCGCGTTTAACTACGGGAAGATGGGCGCCGGGGGGCAGCGTTTAAAGCTGCCGTACCAAGTCACTCCATCCCGGGACAGCGGCCCCAGTCCGGCGGAGAGGCGCCTTGAGGCCCTCACCCTGGAGCTGGAGAAGGAGCTCGAGATGCACATGAAAAAGGAATATTTCGGTATCTGTGTAAAGTGCGGTAAAGGTGTGTATGGAGCGAGTCAAGCGTGTCAGGCGATGGGGAACCTGTATCATACAAACTGCTTCACCTGCTGCTCCTGCgGACGGAGGCTACGAGGAAAGGCTTTCTATAATGTCAATGGAAAGGTTTACTGTGAGGAAGACTTCCTGTACTCTGGGTTCCAGCAGACAGCAGAAAAATGCTTTGTGTGCGGTCACCTCATCATGGAGATGatCCTTCAGGCTCTGGGTAAGTCGTATCATCCAGGCTGTTTTCGCTGTGTGGTTTGTAAGGAGGGTCTGGACGGTGTCCCTTTCACCGTGGATGTGGAGAACAACATCTACTGTGTGAAAGACTACCACACGGTTTTTGCTCCTAAATGTGCCTCTTGTAACCAGCCCATCCTCCCAGCGCAGggtTCAGAGGAGACCATACGGGTGGTGTCCATGGATAAAGATTACCATGTGGAATGCTATCACTGTGAGGATTGCAGTCTGCAGTTGAACGACGAAGAGGGGCATCGCTGTTACCCGCTGGATGGACACCTGCTGTGCCACCGATGCCACCTGCACCGGTTAAAAACCCCTCATCCGGCCCACCCGCCCCCGAGTTACCCGCTGCACGTCACTGAACTGTGAACACGAAGACGGGAGGACCGCTCCTTCCTCTAAACAATAAACAGGAGCCCATTTGACCGAGCGGGGAGGcttctattattatttcatcCCTCGTCGAGGTTACGGAGGGGTTTGGGCTCGGCGTCCGGCGTTAGGGATCGAAGGGAGACGCTTGCCCGTTTTTTCCTCCTGAACGCCAAACAACAGCACTGAACACGGACTGAGATACGACTTCCTGTGCCTTCATCGGAAATCCTGCGTCGATTGCTGCCTTCGACACGCACCGTTTCTATCTCCTGCCAGATATTTGTGCCAAGCTGCTGGGgtctttaaagggacagttcacctgaAATTATAGCTGCAAACTTGTACGAGCTTTTCTTCCGCGgcagaaatacattaaaatctCATTTCAAGGCAAGAcactacaggaaaaaaaaaactgtttattttgcttCCACAAGAagtccattttttttccctcagtgcatagaaataatctaaaatacacCTTTAAGTTACACTTTAATTATAGTTTTCAGCTAAATACACATTCAGTACACATTCTCTAatcaatatgcatttaattttatagttttattctTATGTATATTCCGAAGGGATGTTTTCATGGTTCGCCTGATATGTAtttaacacataaaaaaaatatgatttattttctgcacattaaataataaaagcccCCTCTGTAAAAACATGccggcaaataaaaaaaaacattgtgcaaattaaagcatttgaaatgcattgtttGAATATCTAAGCATTTTTAATAGAGATACCTTAACTTCATTAAGCACAATCACCTGCATGAAGTcttgctttctaaaaaaaagtatcttgttttcgcttaaaaaaaaaaataaatgtcagaaaatctttattaaaataaattaataattaaaatcttaattcaaagaaaaaacattgttggatatatttttattttaagaataaatcTAGCTTAATGTCTTATATTTTGCAGAAAAGgcttaatatctttattttctgccatgtattttgcatatttaaacatagcGTTTCATAAAACTTGTGATACGAATCAAGGAAAGTATAACGAAACCTATTACCTATTTTCTTAATTAACCTGTGGTGGCTTGCCTTAAACTGTCCATAAATAGTTTGAAGAGGGTGAGCAAATAAGGGTGAACTGTGCTTTTAATCATCGATTTAATGGCAGCAATGGGCCGAACGCTGATGCATCGCTGACGTTTTCTTCACCAGGTGACGTTGTGAAACCTGCTGCACATAGATGGActtacaaatgtatattttgctgTCTGACATGAACCAGGCCGTTACGACCCGACACCAGCAGAACGGGGCTGGATCTGTGAACTCTTACGTCGTGCTCTTCAGACACTGGTTTGTCTCTTGATGAGGTGCCTTCCTGCCTTACCTATTCCTTAACGTGGAGGAGACGCGCTTGCAATGTGTCTCCGGAGACTCTTAAGGGACTCTAGAGGTGCGCAGGGGTCAAAGGTCGCGCCTGGATGTGCTGGACTCAGCCAGGCCCCGGAAACCCGCTGCGCTCGTCCTACGTTTGCGCGGTGCAACGGAGCGCAAGGCAACAGAACATTTTGCACATGTCAGAATAATAGTGAAGTCGTGAAGActatgaaaaaaacacacacgtgtAGAAGTCTGGGAATGATGTCAAAATTACTTCCTCTTGGTCTGGATTCACATCGACGAAAAATTATGCGTTGCTGGAAGCTTATTGCATCACGTCGCACCTGTTTAGGACATAAGTGAGCGTATATGTGGAaaagagagtctgtgtgtgtgtgtgtagttgtgTATATGTTCATGTGCACTAGTGGCTGggccactgtgtgtgtgtgtgtgtgtgtgtctcaaatACCGCGACCTTGATGAGTATTTAGACACTTAAAGatatagtccacccaaaaatgaagccgttagatgagtttgtttcttcatcagattggGATAAATGTAGCATCGCATCAGtgtcagtgaatgggtgccgtcagaatgagagtccaaacggctgataaaaacatcacaggtAATCCACCCCACTCCGGTCTAGCAGTTAACATCTTAGATAGATACAAATCCATCATGTGGaggtttttcatttcaaaccggCGCTCCCAGCTAAAATACGAGTCCATAATAAAGACTAGCAGACGCTGCCTTAtgtgtgcagatttctctcctgattcagaccagattACTTTTCCACAGTATTACAGTTATTACGAAATCATATTTTAGCCGGGGAGGTGCTGCGACGGCCTCCAGCCCGAAccgggctctcattctgacggcacccatccactgcagagcAATGCTGCATCACTGCAAAAAGCTGCTGATAAGAAACGAACTCATCTACATGTCAGACGGCCTGAGGATGAACGGTCTCAAGTGTCTCAAATGCTTCTCGGGTCACTGTTCCACACAGACATCTGTGATACTACTGACAGAACCCGGGTTCTACGTGTTCCCCTCACCCGAGAAGACCCGACACAGAGAGTCGTCTTTGAATCCAGTGACTTCTTATCTGCAAAGCAGACCGTAAAGCTCAAGCGAAGAAGCGTGTTTGCTGACTGATTACCGTACCTGCTCGTCCTGAAGGAAGATCCTGGGTCGATGTACAGCGTCTGTGACATGCTGTCGGCGGCCGGATGAAATCTTTCCCAACCCAAGTGTTTTCTGTGCTAATCGACAGCATGAATATCGAATACGATGACAGAACATATCTCTCTGAACGGTTCAGCAGCCTCAGACGATTCCGCTTTCAGATCATTCCaagtgtttggtttttttttttgtgcataataTTTTTCTCCACGTTGTCTTAATCCACTTTTAAAACGTACTACTATTGCATAGCACAACGCTAGAGTCCCTGTAAATAAAGAGCGTAGAATGTATTTCCTGCATTTATCAGAGATTAGACGAACGGTAGCTTTCCTTCAGttagttctttaaaaaatgcacatctTACGTTCTGTTgcatcacctttttttttttttttttttttttatcgtacAATGTTTCGATTTCCtagatatttcataaataaagaaaaggcAAAGTAGATTTATTTATCTAAACGTGAAAagtttaaagttatttaatgtATGAAGAGTCGGGACGTATCATTTAACCGTAGATTTATGTAATCTGCTTTTTCAATAAAGTGGTTTTTGTAGTTAA

Function

GO:

id name namespace
GO:0035844 cloaca development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0036064 ciliary basal body cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187898 lncRNA upstream 29818 17857012 ~ 17858149 (+) True G127243
TU187896 lncRNA upstream 32156 17854650 ~ 17855811 (+) True G127242
TU187894 lncRNA upstream 36254 17818738 ~ 17851713 (+) True G127240
TU187887 lncRNA upstream 73545 17808601 ~ 17814422 (+) False G127239
TU187883 lncRNA upstream 73545 17808674 ~ 17814422 (+) False G127239
TU187874 lncRNA downstream 12200 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA downstream 12200 17929468 ~ 17933819 (+) False G127233
TU187928 lncRNA downstream 55282 17972550 ~ 17974502 (+) True G127263
TU187939 lncRNA downstream 60407 17977675 ~ 17981341 (+) True G127268
TU188151 lncRNA downstream 434472 18351740 ~ 18352103 (+) True G127413
XM_043264449.1 mRNA upstream 760 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA upstream 760 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA upstream 760 17884361 ~ 17887207 (+) False sdr42e1
XM_043216686.1 mRNA upstream 110990 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA upstream 110990 17769771 ~ 17776977 (+) False pigb
XM_043264339.1 mRNA downstream 19762 17937030 ~ 17969461 (+) False LOC122362789
XM_043264342.1 mRNA downstream 19816 17937084 ~ 17969461 (+) False LOC122362789
XM_043264340.1 mRNA downstream 25784 17943052 ~ 17969461 (+) False LOC122362789
XM_043264341.1 mRNA downstream 28040 17945308 ~ 17969461 (+) True LOC122362789
XM_043264208.1 mRNA downstream 66210 17983478 ~ 18070581 (+) True LOC122362666
XR_006253166.1 other upstream 756 17883665 ~ 17887211 (+) True sdr42e1
TU187881 other upstream 75800 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 476374 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 578809 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 581993 17303820 ~ 17305974 (+) False LOC122322904
TU187918 other downstream 5660 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 8832 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 221267 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 643098 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 643098 18560366 ~ 18561610 (+) False G127456

Expression Profile