RNA id: XM_043216687.1


Basic Information

Item Value
RNA id XM_043216687.1
length 1994
RNA type mRNA
GC content 0.53
exon number 12
gene id pigb
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17769658 ~ 17776977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGGTCCGAGGCTCGAGCGGAGACATGGAGAGGATTCGGGAGCGCTTCAAGCCGAGCGAGTCCTCGAGTGAATCAGTGAGGCTGAGGAAGAGGAGCTCCATCCTGTACAACACAGACGTCACGCAGCCCCAGACACCCAGTGAGAGTCCTGCTCCTCACTTTACACCTGTTTCACAGTTCAACCTCTTTAGCAATCTCTAAATAACCCAAGAATTCTTCGGGATCAGCGTCGCCGTTTTCTCGGTCGTGTTTCGCCTGCTCAACTGCGTCCTGGTCCAGACCAGCTTCGTCCCGGACGAGTACTGGCAGTCTCTGGAGGTCTCCCATCGAATGGTCTTCAAGTATGGCTACGAGACGTGGGAGTGGAAGGAAGGCATCCGGGGGTGTTCTTATCCTCTCCTGTTCGCCCTGATGTACAGACTCCTGCATCTGATGAACTACGACACGGTTTATTTATTGGTGTTTGCGCCGCGTGTTTTCCAGGCGCTGCTGGCCGCGTACGCAGACGTGAAGCTGCATAACCTCGTCCTGCGGTGGGAGACTCCGGACGTGGCCAAATGGACGtttttctgCCAGCTGTGTTCGTGGTTCACCTGGTTCTGCTGCAGCCGGACTTTGACCAACACTATGGAAACGGTTCTGACCACCCTGGCGCTTAGCTATTTCCCTTTACCCGGCTCTCAAACGCAAAACAGCTGGAAGTATCTGTCTCTGGTGTCGCTGGCCGTCGTCGTTCGCCCCACCGCCCTGATCGTCTGGCTTCCTCTGCTCTTCTATCATTTCTGCGTTGATCAGAACAAGCTGAAGCTCGTCACGCAGCGATGCTTCCCCATTGCGGCTCTCGCTCTGGCCGTCTCCACGCTTACAGACTCTGTGTGCTATGGAAagTGGATCGTGGTCCAGTGGAACTTCCTGAAGTTTAACGTGCTGCACAACGTGGCCGAGGTTTACGGCTCTCACCCGTGGCACTGGTACTTCAGTCAGGGTCTGCCGGTCGTGATCGGCCCGCACCTCCCTCTCGTCCTGCACGGATGTTCTCTGGCCACCAGAAAGCACCGGATCCTGCTGATAACCATCCTGTGGACCACAGCTGTGTACAGTTTGCTCGCACACAAGGAGTTCCGGTTTGTTTATCCCGTGCTGCCGTTCTGTATGATATTTAGCGGGATGTCTCTAGCGAAGCTGCACGCGTGGAGGAAGCCTGCCGCCGCCGCCCTGCTGCTCTTCAATCTGATTCCTGCCTTGTATACGGGTTTGATTCACCAGCGGGGAGCTCTGGACGTCATGCGCGACCTGCAGGGACTGTGTGACCCCGGCGACTCTCAGAGGTCACCTGAGCTGCTGTTCCTCATGCCCTGTCACTCCACACCGCTCTACAGTCACCTGCACTGTCCCCTCAAAGTGCGCTTCCTCGAGTGTCCTCCAGATCTCACGGGAAACGAGGAGTACGTGGACGAAGCCGACGTGTTCTTCTCCGACCCTCTTCACTGGCTCCGGACGTCCTTCCCGTCTCAGTCCGCCTCACCTTCACACATAGTGCTGTTCGACTGCCTGGAGAAGGAGATTTCGTCATTCCTGGAGAAAAACCGATTCGCCAAACAAGCCGAAATCTTCCACACGCACTTTCCtgaaggtcgagtgggaagaaacatattaatatacacCAGAGGATCTGCACCGAACGCCCACtgaagttttgtgtttttgccaCACTCCAGAGTAAGATCGGGTCTGTTTTAGCTCGAAGCAGGAGGACGACCGTCAACCAAGCAGTGAAAGACTTTTATTCTGAAGTTTTGAGTGCAACATTAAGCAGTTTAAGTGCATTTGTGTTCAATTACAAACAAGGAATGTCATTTAGCCGATAAGCACACAGACGAGAAGAAGGGGAAAATAGTGCAGATTGAcactttaataactttaaataatatcttCTGCTGATCTGCATGTTCAAATAAAACTGGTAACAGACACCAGATTACTTCAAAGTGCA

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187835 lncRNA upstream 18520 17750377 ~ 17751251 (+) True G127208
TU187834 lncRNA upstream 18589 17750352 ~ 17751182 (+) False G127208
TU187831 lncRNA upstream 19595 17749391 ~ 17750176 (+) True G127207
TU187819 lncRNA upstream 74178 17695334 ~ 17695593 (+) True G127195
XR_006246945.1 lncRNA upstream 241841 17521624 ~ 17527930 (+) True LOC122323095
TU187867 lncRNA downstream 5621 17782598 ~ 17783703 (+) True G127228
TU187873 lncRNA downstream 17884 17794861 ~ 17933819 (+) False G127233
TU187887 lncRNA downstream 31624 17808601 ~ 17814422 (+) False G127239
TU187882 lncRNA downstream 31697 17808674 ~ 17812167 (+) False G127239
TU187883 lncRNA downstream 31697 17808674 ~ 17814422 (+) False G127239
XM_043264911.1 mRNA upstream 76537 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 76537 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 269254 17498529 ~ 17500517 (+) True LOC122362636
XM_043216873.1 mRNA upstream 287591 17457092 ~ 17482180 (+) False lrch3
XM_043264449.1 mRNA downstream 106641 17883618 ~ 17887207 (+) False sdr42e1
XM_043264448.1 mRNA downstream 106688 17883665 ~ 17887207 (+) False sdr42e1
XM_043264450.1 mRNA downstream 107384 17884361 ~ 17887207 (+) False sdr42e1
XM_043216610.1 mRNA downstream 110990 17887967 ~ 17917268 (+) True LOC122323000
XM_043264339.1 mRNA downstream 160053 17937030 ~ 17969461 (+) False LOC122362789
TU187698 other upstream 358178 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 460613 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 463797 17303820 ~ 17305974 (+) False LOC122322904
TU187377 other upstream 605014 17129922 ~ 17164757 (+) False LOC122362575
TU187881 other downstream 31697 17808674 ~ 17812167 (+) False G127239
XR_006253166.1 other downstream 106688 17883665 ~ 17887211 (+) True sdr42e1
TU187918 other downstream 145951 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 149123 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 361558 18138535 ~ 18140253 (+) True G127292

Expression Profile