RNA id: XM_043216733.1


Basic Information

Item Value
RNA id XM_043216733.1
length 1414
RNA type mRNA
GC content 0.51
exon number 8
gene id yif1b
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15066862 ~ 15072223 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGATGTCTGTCACACGATCGCTGTTCCTCTCTAATTTTCCTGCTATTTCTGCGGTGCTAATTTTAGTTTCACTACCGGCAGCTTCTCGGTCAGTCGTCTAAATGCGCTGATAAAAATTCATATATGTTTTTCGTAACCTCGTTATTCAGATAAAGACGCATTTCCAGGAGAGATGGAGTATCCAAACCAGAGTGGGTTCAGACAGCGTAAGTTACAGCCGAACGTCAGGATGCGAGGGGCCCCGGCGGACCCCAGCGACCCCGGCGTGCTGTTTGACGACACCAGCTCCGGAGGGAACAAACGCGAGCAGAGCGGTGCAGGAAAAGCCCCCGACGCGTACCCGGGACAGGCTTTGCTCTCGGAGCCCATGTCTAACCTCGCCATGGCCTACGGCAGCAGCCTGGCCTCCCACGGCAAAGAGATGATGGACAAGAACCTGGACCGGTTCATCCCCATCTCTAAGCTGAAGTATTATTTTGCGGTGGACACGGTGTATGTGGGCAAGAAGCTCGGCCTGCTGGTGTTTCCCTACATGCACGACAACTGGGAGGTGAGCTACCAGCAGGACACTCCGGTCGCCCCGAGGTTCGACATCAACGCCCCTGACCTGTACATTCCCGTGATGGGGTTCATTACCTATATTCTGGTAGCGGGACTGGCTCTGGGCACACAGAACCGGTTTTCTCCGGAGATCCTGGGCATTCAGGCCAGCTCGGCGCTGGTGTGGCTTATCATTGAGGTTCTGGCTGTTCTTCTCAGTCTTTATTTGATCACGGTTAACACCGACCTCACCACCATCGACCTGGTGGCCTTCTCTGGATACAAATATGTTGGGATGATTGTGGGCGTGATAGCAGGACTTCTGTTTGGCCGGATGGGATATTACCTCTCGCTGCTCTGGTGCTGCGtctctatttttgtttttacgATTAGGACACTGCGGTTAAAGATCCTGTCTGAAGCGGCCGCGGAGGGTCGGTTAGTGCGAGGAGCCAAAAACCAGCTGCGGATGTACCTGACGATGGCCATCGCTGCGGCGCAGCCTGTCTTCATGTACTGGCTGACCTTCCATCTGGTCAGATAAGAGCCGCGGGTGTCTGGAGGATCAGCCATATCGTTCGTCCCGCAGCAGTCACAAACGTCTTTTTGCACACGTTTAATAAACCAATGGACACGCGTCGTGCATCTTCACAGCACAATACGAACGATCTGAACTGCAATTGCCCAGCAGTCTTTTGTATGTTTTGGTTTGGACATTTCTAAGAGTCTctgttggtttttgttttgtataatgtacagcgtaattgtattttttttaatgtaaaactgtgtttgtttgcaaacaAAAGGTCGTAGATACCGTGGCTTGAGAAACATGAACGTGACTGTTTGGTGGCCGAAAGACCGATGAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186725 lncRNA upstream 285 15066346 ~ 15066577 (+) True G126458
TU186722 lncRNA upstream 18985 15035383 ~ 15047877 (+) False LOC122362588
TU186586 lncRNA upstream 82114 14932321 ~ 14984748 (+) True G126347
TU186584 lncRNA upstream 129228 14936925 ~ 14937634 (+) True G126345
TU186590 lncRNA upstream 156705 14909829 ~ 14910157 (+) False LOC122322993
TU186908 lncRNA downstream 688740 15760963 ~ 15820330 (+) True G126591
TU186927 lncRNA downstream 753204 15825427 ~ 15828353 (+) True G126605
TU186957 lncRNA downstream 927229 15999452 ~ 16003818 (+) True G126626
XR_006253180.1 lncRNA downstream 986311 16058534 ~ 16058974 (+) True LOC122362955
TU187074 lncRNA downstream 1136361 16208584 ~ 16211583 (+) True G126711
XM_043264103.1 mRNA upstream 2024 15052044 ~ 15064838 (+) True si:ch211-136a13.1
XM_043264122.1 mRNA upstream 18969 15035389 ~ 15047893 (+) True LOC122362588
XM_043264968.1 mRNA upstream 145839 14911044 ~ 14921023 (+) True shkbp1
XM_043264969.1 mRNA upstream 145839 14911147 ~ 14921023 (+) False shkbp1
XM_043216605.1 mRNA upstream 156721 14906616 ~ 14910141 (+) True LOC122322993
XM_043265083.1 mRNA downstream 360733 15432956 ~ 15442131 (+) True dusp8b
XM_043264689.1 mRNA downstream 377118 15449341 ~ 15482697 (+) True mob2b
XM_043264688.1 mRNA downstream 394781 15467004 ~ 15482697 (+) False mob2b
XM_043264687.1 mRNA downstream 398605 15470828 ~ 15482697 (+) False mob2b
XM_043264241.1 mRNA downstream 439312 15511535 ~ 15518917 (+) True scamp5b
TU186589 other upstream 157186 14909198 ~ 14909676 (+) False LOC122322993
TU186588 other upstream 158379 14907267 ~ 14908483 (+) False LOC122322993
TU186575 other upstream 238570 14826881 ~ 14828292 (+) True gemin7
TU186297 other upstream 1125493 13940095 ~ 13941369 (+) True G126146
TU186336 other upstream 1154062 13909564 ~ 13912800 (+) True G126175
TU186953 other downstream 879796 15952019 ~ 15953653 (+) False LOC122362954
TU187042 other downstream 980655 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other downstream 980906 16053129 ~ 16055627 (+) False LOC122362745
TU187112 other downstream 1192535 16264758 ~ 16271267 (+) False LOC122362750
TU187265 other downstream 1745508 16817731 ~ 16818399 (+) False G126820

Expression Profile