RNA id: XM_043216803.1


Basic Information

Item Value
RNA id XM_043216803.1
length 1965
RNA type mRNA
GC content 0.43
exon number 2
gene id sertad3
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13594302 ~ 13597214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTAGATGTTTTTATAGCTTTCTTGTTAACGGATGttgaatttaaatacaattgCAGTTCTTGTTTGAAGATGTTAAAGTGGGGTTTATAAttagtatatttacatttatggacATAAATGGACAAAAACTTGCATTAAGCAAATGCTTGTCTTTAgtataaaaaccaaaaataatatatttatagcataaagaaaaaaaaatattatggacAGGGCGCTTTAACTATCCTGTTTAGATACACAGGAACTAGCAGGTACTTATACTTGAATGTCTATagtatgtattgtatttttgctattttgtacatttaccattttgtatattattctttttattatctgtctcTTGTCTTGTCAtcctgttgcactgtagagcttctgtcactaaaacaaattcctcgtatgcgTAAAcgtacctggcaataaagttgatCGTGATTCTACTACAATACCCGGCGTTCATTTCGCGCGTGACGTCAGAGCTGATTGAATCACTGGCGGGACAAAAAAACTCCAGCAAAACCTCCAGTCACCCGACGCTTCAGCATCGTTATATGATTTACACAAAGCGAATGACTATAAAACTACAAGAGTCCCATCGATTTTGGAGTTGGTTTACATTCGTTACAGCGTGAGAAATGGTGGCCAAGGGACAGAAGCGTAAGCTCCAAAGGGAGGACGAGGGAGGAGGTTCGGCGTGGGAAAGGCAGCTGCAGTCCGTGCTGGACATCTCCATGGATAAGTTCCACCGTCACCAGGCTCTCGTGGAGCCCTGCTTGTTACGGTCAGTTCTGATCAACAACACACTGCGGCAGGTCCAGTCCGAGGTCCAGGCGCAGGTCGAATCGCTGTCCGCTCTGAAAAATTCACAACCGCCTCCTCCAGTGGAGATTAATGCACCTTTGTTCTCGCCGAATGCTGAAAATACGGAGGAGGACTTCATGGCCTGGACCTCAGAGGAGGATTTCTCGCTGTCTTCAGCCATTTCTGCCATTCTTAAAGATCTAGATGCGGCCATCGACGCCGGTCAAGGGCCTTGCGCGTCTCAGCGGGCTCCGCTCGGCTCTGTAGAGAATCTAACGCAGTGTCCCCTGAGGACCGCGAGAACGTCCGACGTGGCATCGGCCGTCAAAACGGAGATGATGCGTCCGGGTTGTCCTCAGGATGTAGCTCTAGATAGACTTCTCCTGAACATCGACGCGTCCGTGTTCGATCCGGAGGTGAACCTTCTGCAGGGTTTCTCCGTAACGGCCGACGATCTAGTGAAGTATCTGCCGTCCCTGTCCAGATCCCCGTCCGCATCCTCTTCCTCGTCTTCAGTCTCCCACATTCAGGCCCCGTGGGAAATCCAGGAGATAGAGCACGTTATGGACATCCTGATGCGGACGTACCCGTAAATCGGTGAAATCGCGTTCCTGATGTAAACGGTTTTTATGGAAGCATGCTGAACGTGCGAGGGATTGAATAAGGCTTTGCTAACCTGACGTTTATCACCTTGAAAGCAGCTGATCTCAATGTCCTGTGGTTAGCAGCAGTCTGCAGTCCTCTGGTTTATGCACATCTTGTTCGGTTTCAAGAAATCCTTTCATGCTAATTAATTCAAGGCGTCATTTAACAGAGTTCAGCACCTGTTATATCAAATCCTTTCAAATGTGCCTTTTCAAATGTTATTCTCCAAAATATGCACTTTCCTTTCGAGTTTAATATGGATACTTATAGTTTACAGGTTACCATTAGGAGTGTTCTTTAAATAGACCAAGGTCATTAAAATGagtgtatattttgtttaaagataTTATGTCCAGTAAGTGTTACGTGAGCATTATGAATACACCGGTGCTGTCTCAGCAGATAAACAAGTAGTTACctatgcaaaatatttactaTGCCAGTATGAAATTATAACGTGAATATTAATCACTTTGTATTCTATtgtactttaaataaagtggTACTTGGTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186228 lncRNA upstream 50527 13543253 ~ 13543775 (+) True G126098
TU185895 lncRNA upstream 223521 13369713 ~ 13370781 (+) True G125887
TU185894 lncRNA upstream 224791 13367416 ~ 13369511 (+) True G125886
TU185889 lncRNA upstream 242572 13350491 ~ 13351730 (+) True G125881
TU185887 lncRNA upstream 247365 13346678 ~ 13346937 (+) True G125879
XR_006246953.1 lncRNA downstream 14845 13612059 ~ 13692558 (+) False LOC122323141
XR_006246954.1 lncRNA downstream 34862 13632076 ~ 13693855 (+) False LOC122323141
XR_006246952.1 lncRNA downstream 34862 13632076 ~ 13692558 (+) True LOC122323141
XR_006246951.1 lncRNA downstream 34862 13632076 ~ 13692558 (+) False LOC122323141
XR_006246955.1 lncRNA downstream 34862 13632076 ~ 13692558 (+) False LOC122323141
XM_043216805.1 mRNA upstream 153 13591816 ~ 13594149 (+) True blvrb
XM_043216806.1 mRNA upstream 153 13591939 ~ 13594149 (+) False blvrb
XM_043263910.1 mRNA upstream 68996 13519067 ~ 13525306 (+) True mmp23bb
XM_043264362.1 mRNA upstream 79607 13501705 ~ 13514695 (+) False ap2m1b
XM_043216801.1 mRNA downstream 97909 13695123 ~ 13704727 (+) True daw1
XM_043216856.1 mRNA downstream 264657 13861871 ~ 13869332 (+) True lbhl
XM_043216855.1 mRNA downstream 272815 13870029 ~ 13873265 (+) True LOC122323172
XM_043264016.1 mRNA downstream 526182 14123396 ~ 14126844 (+) True rbm7
XM_043263900.1 mRNA downstream 533285 14130499 ~ 14147187 (+) True barx2
TU185911 other upstream 163537 13427097 ~ 13430765 (+) False rpl35a
XR_006253129.1 other upstream 375956 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 375965 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 638357 12946841 ~ 12955945 (+) False glb1l2
XR_006246942.1 other upstream 668834 12917226 ~ 12925468 (+) False napab
TU186277 other downstream 81831 13679045 ~ 13682571 (+) True G126132
TU186336 other downstream 312350 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 342881 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 1229667 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 1310053 14907267 ~ 14908483 (+) False LOC122322993

Expression Profile