RNA id: XM_043216855.1


Basic Information

Item Value
RNA id XM_043216855.1
length 2766
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC122323172
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13870029 ~ 13873265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAACGTCATCCTTCTCTCTTCCAGTTCCAAACGAGTCTTTTATTAcgctttttaaattgaaaaagttttaaagacCAACGACAGCTTCAGACGTGTAAGTGCTTACACAACAGCGCAAAGGAAAAGGCTTGGCACACAGCGCTTTGCAACCGTTTCCTGTGTATACCAGTCGCAAAAATAGATGAGCTGAATAATATCTGGTGAAGCAGATCGGCAAAACTTCTGAgagCTGAAATGGAAGAACGTGACttcaatttttcttttgaatataaTGACACCGACTGGTGTTTTGGCTCCGAAAACTGCACCGATATAGAGATCCCCACTGAACTGTCACCGTCGACGATAGGTCCCCGGCACTGGATTGCTCTGGTCTGCTATCTCATTGTGTTCCTGCTGGGCGTCCCGGGGAACGCTCTGGTGGTGTGGGTGACCGCGTTTCGAATGCCTAACTCTGTGAATGCGCAGTGGTTTCTGAATCTGGCCGTGGCGGACCTGCTGTGCTGCTTGTCGTTGCCTCTTCTCATGGTGCCGCTCGCCCAGGACCAGCACTGGCCTTACGGCGCTGCGGGTTGCAAGCTGCTCAGCGGTTTGCTCTACATGATGATGTACTGCAGCGTCCTGCTCCTGGTCGTGATCAGCTTGGACCGTCTGCTCCTGGTGACCAGACCGGTGTGGTGCCAGAACCACAGGAACACGAGGCAGGCCCGCTGCGTCTGTTTTGCCGTCTGGATTCTCGCTCTCCTGGCCAGTTCTCCTCAGTTTGCTCACATGGAGATACACGAACTGAGCGAGACCAAAACGTTGTGCGACGGCAAATACAACAACTTAGCTCATGCGTGGTCGGTAACTCTTACGCgctgttttctgtcttttctgcTGCCTTTCCTGATCATCTGCATCAGCCACTGGAAGGTTTACATCACGACGAGCTCTGGCCGAGGGCAAAGAGGCAGTGACAAGTCGGCCAGGACGGTACGTGTGATCCTGGCGGTGGTGCTCAGCTTCTTCCTCTGCTGGATTCCTCTGCACATAGTGGATATTCTGCTGCTGATCATGCACAAACAACCCCACAACGTCCTAGCCAACTTGCGACTAGCCCACGTGCTGACGCTCTGCTTAGCTTACATTAACAGCTGCCTGAACCCGCTGCTCTACGTATGTCTTGGCCGCGGATTTAAGAAAAATCTGATTAGCTCGTTGCGAAGTGTGCTTCATTTCGCATCCGAAGCACCGCATCATAGAACCAGCTTGACTGCAAACAGTAAGTCAACCACAGACGGGTTCAGAGAGAAGCCCTTATGAAGAAAATCTACTCTTCGAATACAAATACCACCCTCGGGAACCATTTGTAGGTTTAAAGAAGCATTCACGGATCACTAACGAACACGCTGCACAACAAAAATGCACACCAATACTGTTCTATGATATTAACAATAATCTTTTTAAACGTTCGTAACAttctcacaattaaaaaaaataattcataaccAGTTTCTATCAGCTAATCAAAAGCAGCTGTGCACAACTCcctatatttacatgcatttcaaTTTTCGCCTATTGCAGTTAATCCAGTTCGAATTCAGATTCTGGGAGTTTATGTGAACACTAAACGCTGCGGTCCGATTCACACAGAGTATTTGATTATATGCGAACAAAACTTTTAAGTTCACGAACCAGAGAATGTCACATTCACATTTTGTGaatctgttatatttttatattttagtgtaaaGAACAAGCACCGAATGCAGATATCACTTTCAGACAAAGGTTTGTtgtctgaaatgaaaaaagtcaCGTGACCAATTTAATACTGAGCAAAACATGGGGCAGCCAAAACTGAGGCGGCTGGCAAAAATAGTCAAATTTTAGCTTTTACACTTCTTTATTTTTCCGGTTGATTGATTGTCAGGTCTACTAAACCGATCTTCAATTAAACCGAGTTCAATCGAGTCGACTGGGGCCTTTCAGTCCGATTAGTTGCATGCTAATTCTGATGCGTTTGGTTCCTAATAGTTAGCATTCATGTAATTCAATGGATTAAAACGTTAAGCATTTACAGCcgatttacaaatatttttaaatattgtcgCATGTACATAGCTTTATTGTACGGTTACGCCATATACGGCATTTCTGTGTAGCGatttaccacagaaaataaatgtggttGTTTTGTAAATACGGACAAAAACGCCGAAGAATCGGTGAAGAATATCGGCTACCACTCCGaaatacatgttaaaaacataacaataagGCAAACTTGCATTAAGTTTCATGCATTACCATGTGGACAAACTGAACTTGCCAGgcgtgtttttaaaatgccgGCTCCTCGTGAGATTAACTAACCAGTAGAGGTCAGTAAAGAGCGAGTGTTAAACCTAAACTTGGCAGGTTAGTTGAGATTTCCAGCCATGAGATGTTGCTTTTGGTGCGTGTGGGTGAGTTTCGAGTATGGGTTAGCAACCTTTCTAACTGCACTACAAGGCAGCTAAATATAACAGCACTCCATGGCAACTGAAAACAATGCAGAAAGCTGAGCAGTGAACAGAAGTCATGTTTTAACCTCTCCTGCTCAACCAATTTGTGGATTGTACATTTTGTGTTACTGGAGCATTTGTAGCATCTTCTCATCAGAAGTCACCTGTAGATACAAGCAGATTTTTGACCATATTTTAACCTTTTCTGTATAATTAATCTTATTCTGTAttgataatgaaaatataaaataaagatataaaggtttaacctt

Function

GO:

id name namespace
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0050679 positive regulation of epithelial cell proliferation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0038178 complement component C5a signaling pathway biological_process
GO:0045177 apical part of cell cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0004878 complement component C5a receptor activity molecular_function

KEGG:

id description
K04010 C5AR1, CD88; C5a anaphylatoxin chemotactic receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186318 lncRNA upstream 3390 13861937 ~ 13866639 (+) False lbhl
TU186286 lncRNA upstream 29897 13809279 ~ 13840132 (+) True G126139
TU186247 lncRNA upstream 163915 13670289 ~ 13706114 (+) False daw1
XR_006246951.1 lncRNA upstream 177471 13632076 ~ 13692558 (+) False LOC122323141
TU186339 lncRNA downstream 42473 13915738 ~ 13917760 (+) True G126178
TU186344 lncRNA downstream 48581 13921846 ~ 13922131 (+) True G126183
TU186345 lncRNA downstream 48892 13922157 ~ 13922424 (+) True G126184
TU186346 lncRNA downstream 49570 13922835 ~ 13923229 (+) True G126185
TU186347 lncRNA downstream 52364 13925629 ~ 13925860 (+) True G126186
XM_043216856.1 mRNA upstream 697 13861871 ~ 13869332 (+) True lbhl
XM_043216801.1 mRNA upstream 165302 13695123 ~ 13704727 (+) True daw1
XM_043216803.1 mRNA upstream 272815 13594302 ~ 13597214 (+) True sertad3
XM_043216805.1 mRNA upstream 275880 13591816 ~ 13594149 (+) True blvrb
XM_043216806.1 mRNA upstream 275880 13591939 ~ 13594149 (+) False blvrb
XM_043264016.1 mRNA downstream 250131 14123396 ~ 14126844 (+) True rbm7
XM_043263900.1 mRNA downstream 257234 14130499 ~ 14147187 (+) True barx2
XM_043216498.1 mRNA downstream 704905 14578170 ~ 14583254 (+) True smtla
XM_043264916.1 mRNA downstream 830895 14704160 ~ 14727887 (+) True fli1
XM_043263957.1 mRNA downstream 878917 14752182 ~ 14775393 (+) True kcnj5
TU186277 other upstream 187458 13679045 ~ 13682571 (+) True G126132
TU185911 other upstream 439264 13427097 ~ 13430765 (+) False rpl35a
XR_006253129.1 other upstream 651683 13216657 ~ 13218346 (+) False LOC122362547
XR_006253128.1 other upstream 651692 13216484 ~ 13218337 (+) False LOC122362547
XR_006246961.1 other upstream 914084 12946841 ~ 12955945 (+) False glb1l2
TU186336 other downstream 36299 13909564 ~ 13912800 (+) True G126175
TU186297 other downstream 66830 13940095 ~ 13941369 (+) True G126146
TU186575 other downstream 953616 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 1034002 14907267 ~ 14908483 (+) False LOC122322993
TU186589 other downstream 1035933 14909198 ~ 14909676 (+) False LOC122322993

Expression Profile