RNA id: XM_043263900.1


Basic Information

Item Value
RNA id XM_043263900.1
length 3797
RNA type mRNA
GC content 0.42
exon number 4
gene id barx2
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 14130499 ~ 14147187 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGCGCGGCAGTGACAGGATAGTTGGTTTATATAGCGGTGACTCAGAGCGCGCCGCGCACTCCCCGCGTGAATGAGCGCGCCGAAGACACCGAGCACACCAGATCAGACGAGATGTCGATTTAGATCACCGCCTTGCCTTAAAACCCGCACACTGCTCCGAAAGAAGGCGATCGGCGAACCATGCACTGTCAGGCAGAGCTGAGGGTCGCGAGCAGCGCGCAGCTGAAAGCCGCCAGGAGACGATACAAGACTTTCATGATCGACGAGATCCTCTCCAAGGAGACTTGTGATTACTTCGAGAAGCTTTCTCTTTACTCGGTTTGCCCCTCTTTAATCGTCAGACCCAAACCTCTGCATTCATGCTCGGGCTCTGCTCCTCTGAGGTCGTATCCTCTGCTGTCGGTGATCACGCACCAGCCTCCCAGCAGCCTCCAGCAGCTCTCCCAGCCGTCTCCTCACCTGCCTCTTCTGTCACCCCAGCACCCTCTGAGCTCAGAGCCCACGGCCAGCGAGACGCCCGTCAGCATCAGCAGCGAGTCCGAGACGGAGCACAGCGCCCCTCGGCTGAAGAAACCCCGCCGCAGCCGCACCATCTTCACCGAGCTGCAGCTGCTGGGCCTGGAGAAGAAGTTCCAGAAACAGAAATATCTGTCCACTCCGGACAGATTGGACCTGGCCCAGTCTTTGGGACTCACGCAGCTCCAGGTGAAGACATGGTACCAGAACAGACGCATGAAATGGAAGAAAATGGTGCTAAAAGGAGGACATGAGGCTCCTACCAAGCCCAAAGGCAGACCTAAGAAGAACTCCATCCCAACCACAGAGGAGATCGAGGCCCAGGAACGGCTGGCGGCCAAACTAGAGGAGGAGAAGCTACGAGGCGATGGGGAAGACGAGGTCTTCCAATCTCAACCTCAAGATCTCAGTACGTCCGCTACATCTGAATCCGTCTGTCCAGAATCCCCGGCGCAAGAACAGGCCCCTCCGTCTCCATCGGAAGCGATGACGACCAGCTAAACGCACAACCAAAGACAGCTACTGAAAGACTTTGACGCTCTCTGGACTTGAGCAGATGAACGGCTTCCCAAGCCTGATTGTTTTGAGTTGACGGTGATCCCCAAAAGTGTACTTCAGACACGCAAAAATGTGTGAATGTCATTGCAAAACATCATGCGTAACAAGAAAAGATAGAATAAGCACACTTCTCGatcaaacatttcattaaaataagctttttttaggTATTAAACGATAAAACAACAGGACAATGTATTTGGACACATTCTGGATGTCAGACTGTGGATCATATTCATAACTATCGAATAAAAATGCGTTTTAAAAGCGTTCCCATAAAGTTATGAAAACCTTATTTCTGAATGTTCTCTGAACGTTCAAACGtgtagttttttatgttttaaaaacatctgtcCTTGGTTGTTTGAATGTTAAGGGAACATTCCATTTGATCATTTAGCAAACATTGTGGCAATGTTACGTTTAGAAAAAagcagtgacatttaaaaaaaaaaaatgttagagaAACGTACATCTAAAACGTTTCAGAAAACGAACAATTTTTGTGATAACATTTCGAGAGCAttattaaaggtatagttcacccaaaaatgaaaattctgtcacaaCTAAATCCTTTTCATGTGCTTCCCTTTTCTCCTGCtcaccaaataaatatatatatatatatatatattttaaagaatgttaatAACAATGTTAATAATAGAGTTGTTGGTTCCatagtattatttttctttcatactATGGAAGGTTTCAGGAAGTGTTTGgttacccacattcttcaaaagatgttttagttttcatacacttaataagaaaaaatctcaggtgacagcattttcaaaaagcagtgaacattttatgttttggcCTCACACCATGGCAGAATGTCGGGCCTGAAAACATTTGGAAATGGGTTTCAAACTGTAACCAACCgtgtaaccaaaaaaaaaaaagtaaatttttggAAACAATGACGTTACGAGTTTTACAGATTCGCACGAGCAAGGatctttttaacaatattttcacTTTCAACTTTCGTACATCATTATCGTGCAAACGTACCTTTATACAGGTCTGGAGtaggttttagtttttttgggtgaattatccttCCAAAGACTAGATAACTTTGAACGAATGCTCTATGAATGTTACTGTTGTGAACATTGTGAACGTTCCCCGTGGACTATCcactaaaaatgaaattgagGCCATTTGCAGATTTTATGTAATGCAATGACATGCAGGCATTTTATAGTATGCAAGTGTCCAGTTACTTTCCACTATATATGGCTATGCCGTGATCTACATTGCTTTACATGTTTGTGTCACACAGCTGCCTcgctgaaatgtattttataaaaaattgaAAGCCATTAACATGCTGCCAGATACACCAACGTATAAAACCGAATCACAAAGACTGACTTTCTTGCACCAGTGCGGCACGTCCTATACGGACAAACagcaagtgtttatttttttctgggtTTGTTCCTCTCTTTCCCTGTAAATATTACCTGTGTAATTGCTCCTGTAGTTTACGGTGCACCTGTGTACTGTAGCATGGGATTCTGTGCCAAAACACATATATCTGAGAAGCTAAAGTGCCCTTTGaggttttttctttctttttttttacgcatCCATGAAGCTGCTGCCATTAAAAGTTAATAGGACGGGTTAGTATGAATACCAGTGTAAACATGTACAGAGTTCTGGATTTCGCATGAGAAAATGTTGCTCTTTTTAAAGCAGGATTGTCCAGTTTGGGTAAAGATTAGCTTTATCCATTCAACATGTCAATGGATAAAGAATCTGTCAGCTTAGTGTAGAAAAAGAACATAAATCgagaaaacattaaaagtagTATTGATTTAAGTAAACCTTCCAAAGTGCCCTCTCTCTGCCAAACGACAATGTGTTTTCTCTACCTGTTTGCAGAgaaaaatagtttcttttgtCCGTTTTATGCGTGGCATGCTTCGACTTTGCTGTATTTCAACCGAATCCTTTCTTCGAATCACCTTTGTGCGTGCGTGTAACCTTTGCGCGGCCGCTTAGCACTATCCTCCGAGGCCGAAAACACGCGGTACACGAACTCCCACGGATCGCGCTAGCTATTGTGTGTCTCGTCCCATTTCGTTCgctttgaatgaaaaaaaaaaacgttgaacCCTTTTCCCCCCGCCGTGGAGTGGCGCAGTGTGACACCACTAAGTGCAGGCTGGTTTTATTACTGTAAGAAAAACCACTTAATCTGTCAGGGACGCAAagcaattaataaatcaaactcGCGCTAGTAAAACCTGCAAAAAAACACGAAAATCCGCGGGACATGTCGAAGCCCGCGGGAGCTCTGCACATGCCTACAGCTGACTGACGGCCCACAAATACATCATCGCAGACTCCTCCATCCTGCATGTCATGAGCTCCGTTTCCAACCGTTGTTGCCTTTTGCgaagattttatttgtatagttgttgtttttttcttctgtgtttggCCAACAgcaaatattgaaaatatattccTTCTttgatatacacacaaaaaaaacactatttttctGGTGTACATACTGAATTTTATTGGGTGAGTAgttattttgtattcttttgttttggaaaagactatatagatagatatttgaCAAGAACCCCTTTTTCACCCAAACGTtctgtaatttttattgtatgtgtgtgtgtttgcatatttaataacatttaataaagatatCAGTAATTTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09361 BARX; BarH-like homeobox

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186455 lncRNA upstream 9649 14120193 ~ 14120850 (+) True G126251
TU186447 lncRNA upstream 61628 14068604 ~ 14068871 (+) True G126243
TU186353 lncRNA upstream 181135 13948152 ~ 13949364 (+) True G126192
TU186349 lncRNA upstream 201442 13928284 ~ 13929057 (+) True G126188
TU186347 lncRNA upstream 204639 13925629 ~ 13925860 (+) True G126186
TU186468 lncRNA downstream 228378 14375565 ~ 14442503 (+) True G126262
TU186500 lncRNA downstream 323573 14470760 ~ 14471015 (+) True G126285
XR_006246940.1 lncRNA downstream 593599 14740786 ~ 14743444 (+) True LOC122323060
TU186590 lncRNA downstream 762642 14909829 ~ 14910157 (+) False LOC122322993
TU186586 lncRNA downstream 785134 14932321 ~ 14984748 (+) True G126347
XM_043264016.1 mRNA upstream 3655 14123396 ~ 14126844 (+) True rbm7
XM_043216855.1 mRNA upstream 257234 13870029 ~ 13873265 (+) True LOC122323172
XM_043216856.1 mRNA upstream 261167 13861871 ~ 13869332 (+) True lbhl
XM_043216801.1 mRNA upstream 425772 13695123 ~ 13704727 (+) True daw1
XM_043216803.1 mRNA upstream 533285 13594302 ~ 13597214 (+) True sertad3
XM_043216498.1 mRNA downstream 430983 14578170 ~ 14583254 (+) True smtla
XM_043264916.1 mRNA downstream 556973 14704160 ~ 14727887 (+) True fli1
XM_043263957.1 mRNA downstream 604995 14752182 ~ 14775393 (+) True kcnj5
XM_043264096.1 mRNA downstream 679601 14826788 ~ 14827678 (+) False gemin7
XM_043264097.1 mRNA downstream 679678 14826865 ~ 14827678 (+) False gemin7
TU186297 other upstream 189130 13940095 ~ 13941369 (+) True G126146
TU186336 other upstream 217699 13909564 ~ 13912800 (+) True G126175
TU186277 other upstream 447928 13679045 ~ 13682571 (+) True G126132
TU185911 other upstream 699734 13427097 ~ 13430765 (+) False rpl35a
XR_006253129.1 other upstream 912153 13216657 ~ 13218346 (+) False LOC122362547
TU186575 other downstream 679694 14826881 ~ 14828292 (+) True gemin7
TU186588 other downstream 760080 14907267 ~ 14908483 (+) False LOC122322993
TU186589 other downstream 762011 14909198 ~ 14909676 (+) False LOC122322993
TU186953 other downstream 1804832 15952019 ~ 15953653 (+) False LOC122362954
TU187042 other downstream 1905691 16052878 ~ 16055627 (+) False LOC122362745

Expression Profile