RNA id: XM_043264314.1


Basic Information

Item Value
RNA id XM_043264314.1
length 1079
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC122362752
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17067094 ~ 17069819 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATTAGTTTGTGATATGACTGTGTGTCAGGTAGCGATGCAGAACCAGATCAACACTAACCCGGAGAGTCCAGACACGCTGACCATCCACACGGCTCCGCAGTTCATCATCGGCCCGGGAGGAGTGGTCAACCTCGCTGGACTCGTCTCGCCCGCCAGCAGCGGCAAGTCCACAGTCGTAGCTGCAGAGGAGTTAATCACCGCAGACTCCGTCGACGGTGCCATACAGCAGGTCGTGAGCTCCGGAGGTCAACAGGTCATCACCATAGTAACCGATGGCATTCAGCTGGGCAACCTGCAGACGGGCACCGGCATCAGCCAGCCCATAATAGTCACCATGCCTGATGGGCAACAGGGTGAGAGAAAACAGCTCAAtGAGACGGTGATCAGCGAGGAGCCGTGTGTTAAGCGTCAGCGCGTGAAGGAGGAAGACGACGATCAGACAGAAGCACAAGACGCTCAGATCCAGCAGACGCTCTCGCTCGAGGACTTCCAGGAGAAAGTGTCTCTTCTGAAGCAGCTGGAGGAGGCGAACCGCGAGGCTCAGAAATACAGACAGCAGTTCCTGAAGAAGGAGCAGGAGGCCGAGGCGTACAGACAGAAGCTGGAGGCCATCACGCGGCAGAGCGCCAAGAAAGCTGCGTGAAAACACGCCGGACATCCGCTTCTGTGACTGAATCCTCATCGTTCATCTCCTTCATGAAGCGCCTCAGCTGTGGTGCTCGTGTGGCCGACACGGGTTCGATTCTGACCCACATCCCACCTTCACCAGCCTTTCAATAAAGAGACAAAAACTCCTCAAAACCCGAACGAGGGATGTGTGATTGTAGAGTAATGTCGGATTTCTAGATGCACAGTAAAAAACAGAGTTGAGAAAACGTAAACGTTTAAGCAGGCAACCAGCTTCAGGAGACTCCTGAGTTTTCGAGAAAAACCTTAACCTTAGATTTTTTTGACCTGCAGGTCGCGTCTGATCGAATTCATCACCGAATATCAGCATGTTTCTAGTGTCCTCCTGCTCGCTGTTTGTGATGCATTTTCCAGGATTTCTGTCATAAagattcttatttttaaaagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187370 lncRNA upstream 33754 17031550 ~ 17033340 (+) True G126881
TU187363 lncRNA upstream 43724 17021386 ~ 17023370 (+) True G126879
TU187356 lncRNA upstream 49569 17015532 ~ 17017525 (+) True G126875
TU187346 lncRNA upstream 51769 17013758 ~ 17015325 (+) True G126867
TU187347 lncRNA upstream 51769 17014520 ~ 17015325 (+) False G126867
TU187378 lncRNA downstream 60103 17129922 ~ 17167921 (+) True LOC122362575
TU187379 lncRNA downstream 60103 17129922 ~ 17171335 (+) False LOC122362575
XR_006253132.1 lncRNA downstream 60151 17129970 ~ 17170984 (+) False LOC122362575
XR_006253133.1 lncRNA downstream 66816 17136635 ~ 17139135 (+) True LOC122362576
TU187393 lncRNA downstream 102186 17172005 ~ 17172305 (+) True G126893
XM_043264852.1 mRNA upstream 95730 16958824 ~ 16971364 (+) True LOC122363001
XM_043264457.1 mRNA upstream 237740 16819287 ~ 16829354 (+) True ulk3
XM_043264649.1 mRNA upstream 277421 16780682 ~ 16789673 (+) True larp6a
XM_043264914.1 mRNA upstream 348936 16705581 ~ 16718158 (+) False myef2
XM_043264913.1 mRNA upstream 348936 16705585 ~ 16718158 (+) True myef2
XM_043264794.1 mRNA downstream 9240 17079059 ~ 17099562 (+) True LOC122362967
XM_043216503.1 mRNA downstream 233950 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 256147 17325966 ~ 17354848 (+) True unc13c
XM_043216683.1 mRNA downstream 355335 17425154 ~ 17425977 (+) True ompa
XM_043216533.1 mRNA downstream 367332 17437151 ~ 17440065 (+) True LOC122322924
TU187265 other upstream 248695 16817731 ~ 16818399 (+) False G126820
TU187112 other upstream 795827 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 1011467 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 1011467 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 1113441 15952019 ~ 15953653 (+) False LOC122362954
TU187381 other downstream 4375 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 60103 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 60103 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 234001 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 234001 17303820 ~ 17309158 (+) False LOC122322904

Expression Profile