RNA id: XM_043264448.1


Basic Information

Item Value
RNA id XM_043264448.1
length 1902
RNA type mRNA
GC content 0.54
exon number 5
gene id sdr42e1
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17883618 ~ 17887211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCACGCCCCCACGGCGTCGCGCACGCCCACTACGCTCGTGGCCACGCCCCCTCGCCTGCCGCTCTATGATCATAATAACAGCAGCGACGTACGTTTTTTGCCGACAGTTCATCTTCAGCCAATCAAAGCGAGGCATCGCTCACTCTTATCCAATGAGCACGCGCGACTGTGTAACCCCGCCCATTCACGCGTTTCCTAGGAAGTGCAGGTTACGCACACTTTGTGATCGATTCAAAGCGCGATCGCAGAGattcCGCTCTCCCTGCCTCTTTAACACAATGGAAGTCAACAGAACGGGCAGAACATACCTCGTAACCGGTGGAGGAGGTTATTTCGGATTCCGTCTCGCCTGTGCTCTCCTCAAAACCTCCTCGAGCGTCGTGCTGCTTGACGTGAGGCCGCCGAGCCAGGAGCTGCCGGAGGGCACCGTATTCGTCCGGGCCGATGTCCGCGACTACGCTCGGGTGGAAGAAGCGGTCCGCGGCGCGAGCTGCGTGTTCCACGTCGCCTCCTACGGGATGTCCGGACGCGAGCAGCTCGATCGAAAACTCATCGAGGAGGTGAACGTGCAGGGGACGGAGAACGTCCTCAGGGCCTGCGTGGCGCACGGCGTCCCCCGTTTGGTCTACACGAGCACGTATAACGTGGTGTTCGGGGGCCAGGAGATTAAGGGCGGCGACGAAAGCCTCCCTTACTTCCCCTTGCACCTGCACCCCGATCACTACTCCAGGACTAAGTCCGTAGCCGAGATGCGGGTGTTAAAAGCGAACGGTTCGCCTCTGAAGGATAACACAGGCGTGCTGCGGACTTGCTCCCTGCGTCCAGCCGGCATATACGGCCCTGGCGAGGAAAGGCACTTGCCTAGAATAGTTAGCTACATCGAGAGCGGCGTCTTCAGGTTCGTGTACGGTGATCCCGATAGCCTGGTGGAGTTCGTTCATGTGGATAATCTGGTGTCTGCGCACATCTTGGCCGCCGAGGCGCTGACTGAAGAGCGTCAGCGTCGCGCCGCCGGTCAGCCCTATTTCATTTCCGACGGAAGGCCTGTGAACAACTTCGAGTTTTTCAGGCCTCTGGTGGAGGGCCTGGGGCACTCGTTCCCCACGCTTCGCCTGCCCTTATCGCTCGTGTACTTCTTGGCGTTCCTGACCGAGATGCTCCACCGCGTCGTGGGGCGCATTTATAACTTTCAACCCCTGCTGACCCGCACCGAGGTCTACAAGACGGGCGTGACGCACTATTTCAGCGGGCGTAAAGCGCGAGAAGAGCTGGGATACGAGCCTAAACCGCATGACCTGGAAGACGTCGTGCAGTGGTTTCGAGGCAGAGGTCATGGGAAGAAGCGCGGCCGGTCGTCAATTAAGAAACTAATTTTAGACGTCGTTCTGGTGGTCGCGTTTGCAGCAGTGGCGCTCTCCTGCCTTCCGGTCGTGGGCCAGTGACGTTTGAGGATTTCAGTTTCAGTGCATTATtTTGCTTAACGGAGAGCAGCACCGAACAAAACTTGATCGTGCTGTCCGGCATGATGCGAGACGATCCGAAGAGCATCTTGGGTTTAAGTGGAGGCGAGAAAATCTGTCTGTACAAAGAGTCACAAGATCATCATCGTCACTTATTTACTTACAATTGATTAGTCacatagaaatataattttttttctttgctttgctttgattTGCATTTATGCCTTTTTGTAATTAGTACACTGCATACGTTTGATCAATTCATGCTTTCTGGGAATTGAACCCGTGACCTTGGCATTGGCTGGTGTCGTGTTAGACTTTTTGAGTTATCCTGAAAGATTTCTGTAACTTgaaattttctgtttattttcagctgTACGTAAATCTCTATCCCAGAGTTTAGAGTCTGTGACTggatgatttatatttaaaaaaa

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187898 lncRNA upstream 25516 17857012 ~ 17858149 (+) True G127243
TU187896 lncRNA upstream 27854 17854650 ~ 17855811 (+) True G127242
TU187894 lncRNA upstream 31952 17818738 ~ 17851713 (+) True G127240
TU187887 lncRNA upstream 69243 17808601 ~ 17814422 (+) False G127239
TU187883 lncRNA upstream 69243 17808674 ~ 17814422 (+) False G127239
TU187874 lncRNA downstream 42261 17929468 ~ 17933819 (+) True G127233
TU187875 lncRNA downstream 42261 17929468 ~ 17933819 (+) False G127233
TU187928 lncRNA downstream 85343 17972550 ~ 17974502 (+) True G127263
TU187939 lncRNA downstream 90468 17977675 ~ 17981341 (+) True G127268
TU188151 lncRNA downstream 464533 18351740 ~ 18352103 (+) True G127413
XM_043216686.1 mRNA upstream 106688 17769658 ~ 17776977 (+) True pigb
XM_043216687.1 mRNA upstream 106688 17769771 ~ 17776977 (+) False pigb
XM_043264911.1 mRNA upstream 190431 17555210 ~ 17693234 (+) True LOC122363047
XM_043264912.1 mRNA upstream 190431 17555211 ~ 17693234 (+) False LOC122363047
XM_043264179.1 mRNA upstream 383148 17498529 ~ 17500517 (+) True LOC122362636
XM_043216610.1 mRNA downstream 760 17887967 ~ 17917268 (+) True LOC122323000
XM_043264339.1 mRNA downstream 49823 17937030 ~ 17969461 (+) False LOC122362789
XM_043264342.1 mRNA downstream 49877 17937084 ~ 17969461 (+) False LOC122362789
XM_043264340.1 mRNA downstream 55845 17943052 ~ 17969461 (+) False LOC122362789
XM_043264341.1 mRNA downstream 58101 17945308 ~ 17969461 (+) True LOC122362789
TU187881 other upstream 71498 17808674 ~ 17812167 (+) False G127239
TU187698 other upstream 472072 17410866 ~ 17411593 (+) True G127098
TU187390 other upstream 574507 17303820 ~ 17309158 (+) False LOC122322904
TU187389 other upstream 577691 17303820 ~ 17305974 (+) False LOC122322904
TU187380 other upstream 718908 17129922 ~ 17164757 (+) False LOC122362575
TU187918 other downstream 35721 17922928 ~ 17928165 (+) True G127258
TU187919 other downstream 38893 17926100 ~ 17928165 (+) False G127258
TU187968 other downstream 251328 18138535 ~ 18140253 (+) True G127292
TU188207 other downstream 673159 18560366 ~ 18561610 (+) False G127456
TU188208 other downstream 673159 18560366 ~ 18561610 (+) False G127456

Expression Profile