RNA id: XM_043264482.1


Basic Information

Item Value
RNA id XM_043264482.1
length 2041
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC122362844
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16362245 ~ 16368810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTTGGTTTCGTTCAGTTCAGGTTTTTTTCAGCTCCTGCTGATATTCGATCCGTCGGTCTATATTTATCTGCTCGGAGCTCAGAGCGCATGCGCAGAAACTCACTCTACACCGAAACAGAACACACCAGAGCCGGCAGTCGCTGAAGGACTGTGTTTGTGTCGGGGGTCTGCTGCAGGCGTGGGCATGGATGTGTATGAGGTCAGAGGTCGCCTGGACGTGATCACAGAGGAGCTGACGGCgagtgaggaggaggaggtggctGATGAAGAGGCGTTTGTGATGGTGCAGGACTCTACTGATGTGGCCACACTGAAGCTGTCCAGAAGCAGGAGCAAACTGAGCCAGAAGATCATGGAGATGGAGAACTTCGCCAGTAACCTGGAGGAGATCTTcatcactgtggaggAGAACTTCGGCCGGCAGGAGCAGAATCTGGAGCAGCACTATAACGAAGTTCTGCAGACGCTGTCGCAGAAGAACGAGGCACGAGCCGCGGCGCTGGATGAGCAGAAGAACAGCAAGCTGGAGCATTTGTACGGTCAGCTGCTGCGATGCGGTCAAACACTGGACACAGCCAAAGAGCTGATCGAGAGAGCACAGGAGCTCCACCGCAGACCAGACAAACATGCCTTCCTGCAGGCTGTCATGCCAGTTATGAAGAGAGTCGAGCAGTTTGCCAGAGAGGAAGTGGATCTAAAGCTGGGAGTGTCTCTGGACTTCGATGTCCCGAAGATGGATCTGTCCCACGTCAGACAGATGATGGACTCCATTAATGTACTTCCAGctccaTCGGCTCCGGTCATGAATCCTCAGATCGCTAACTCTGCCACAGACACATCACTGCACGTGTGCTGGAGTCTGTTCTCGGACGACACTGTGGAGTTTTACGAGCTTTCCTGGCGTCTGATCTCTGATGACTGCACTATGGAGATGCAGCAGGAAGtggCTCAGCTGAAGGTGAAGGAAACTCACTGCACCGTGTCTGATCTGCTTCCTAACGCTCAGTATGAACTTTGGGTGACAGCCACCAACACCACAGGCATCAGCCCGGCCAGCGAGAGGGCCGTCTACATGACGGTTCCCTCTCCTCCGGTCCTTAAGCCACGGCAGTGTGTGAGCAGCCTGGACTCGGCGCTGATCCGCTGGGACTCTGGAAACACCGATCCAGTGGAGTCGTACACGCTGGAGCTTCACCAGACACATGCAGATGGCTGCTCTGTCACCGAGTCCATCGTGGCGATCCCATCCTGCGAGTGTCTGCTGCAGCTTCAGCCCCGGAAGAACTACATCATCCACATCAGAGCCGTGAACATCGGGGGCCCGAGTGACCGGAGCCAGCCCATCACTGTCTCCACCATAGGTACATTCTTCCACCTGCTGGAAGACACCGCACATCCGAGCCTGTCTCTGTCAGCTGATGGCCTCACTATGTTCTATCTGGATGAAGATCTTCCCATCAGTCACATGACCTTCAGCGACAACACCTTCAACAGGTGCGTGGCGGTTCTGGGTGACCTAGTGCCCGTCAGAGCCCAGTACTACTGGGAGATCGAGGTGGACGAGAGCACAGAGTTTCGTGTGGGTGTAGCGTACGAGGACACACAGCGCAACTCATACCTGGGCGGGAACAACACGTCCTGGTGCATGAGACACATCCTCACGCCGTCCAGGCATAAATACGAGTTCCTGCACAACGGCTGGACGCCGGACATCCGCATCACCGTGCAGCCGCTGCGGATCGGTGTGTTTCTGGATTATTCCCGTGGGATCCTCTCCTTCTTCAACGCCGCGCTACAGCAGCACCTCTACACCTTCAGCGCTCAGTTCCTGCACTACGTCCAGCCGTGTTTTGCTCTGGATAATCCCGGAGCACTGATGCTCCACACCGGACTGACCACGCCGTCACACATCACTCAGGCCTGAGCTGAATAAACCAGACACCAGCATCTGTGTGgacttgctttcttttattattcCATAGGAACAGTTACACAGCGGTCAGTAAAACATGTGATCAAATAAAAGTGTGCTGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187097 lncRNA upstream 696 16355231 ~ 16361646 (+) True G126722
TU187095 lncRNA upstream 696 16357470 ~ 16361646 (+) False G126722
TU187083 lncRNA upstream 13439 16267014 ~ 16348903 (+) True G126716
TU187074 lncRNA upstream 150759 16208584 ~ 16211583 (+) True G126711
XR_006253180.1 lncRNA upstream 303368 16058534 ~ 16058974 (+) True LOC122362955
XR_006253168.1 lncRNA downstream 7628 16376438 ~ 16378666 (+) True LOC122362848
TU187126 lncRNA downstream 36645 16405455 ~ 16406624 (+) True G126743
TU187101 lncRNA downstream 85187 16453997 ~ 16494634 (+) True G126723
TU187149 lncRNA downstream 93982 16462792 ~ 16463512 (+) True G126755
TU187106 lncRNA downstream 122723 16491533 ~ 16493553 (+) True G126726
XM_043264487.1 mRNA upstream 13437 16338045 ~ 16348905 (+) False homer2
XM_043264488.1 mRNA upstream 13437 16339034 ~ 16348905 (+) True homer2
XM_043264486.1 mRNA upstream 13437 16339035 ~ 16348905 (+) False homer2
XM_043216848.1 mRNA upstream 27882 16329709 ~ 16334460 (+) True hdgfl3
XM_043264280.1 mRNA downstream 42555 16411365 ~ 16419019 (+) True zgc:158482
XM_043264287.1 mRNA downstream 51384 16420194 ~ 16426174 (+) True slc27a2a
XM_043264278.1 mRNA downstream 73670 16442480 ~ 16452118 (+) True usp8
XM_043264279.1 mRNA downstream 73670 16442480 ~ 16452118 (+) False usp8
XM_043216850.1 mRNA downstream 133124 16501934 ~ 16504465 (+) False mibp2
TU187112 other upstream 91075 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 306715 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 306715 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 408689 15952019 ~ 15953653 (+) False LOC122362954
TU186589 other upstream 1452666 14909198 ~ 14909676 (+) False LOC122322993
TU187265 other downstream 448921 16817731 ~ 16818399 (+) False G126820
TU187381 other downstream 705384 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 761112 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 761112 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 935010 17303820 ~ 17305974 (+) False LOC122322904

Expression Profile