RNA id: XM_043264486.1


Basic Information

Item Value
RNA id XM_043264486.1
length 2355
RNA type mRNA
GC content 0.49
exon number 9
gene id homer2
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16338045 ~ 16348905 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagcgagagagggagtgtgtgtgtgtgtgtgtgtgggctgaTCCGCGGCGCGTCGCTGCTGAAGCGCGTCTGACCGTCTCTCAGTTTGGATTCATGATCATCGGCTGCGGACTGAACTCCGCACGGACGCGTTTCACTGTTCCAGCCtggaaatattaataaagatcCGCCAGCTCGAGCTGAAGTTAGTTTGTCGCGGGATATCAGATTTCTGTAGGAAATATTCTGCGCTGGAACTGATGCGGGAGATTTCTGAGTCTCTGTAACTAAAGACGCTTCACGGATCCGCCAGAGAGCAGCGCGATGGGgGAGCAGCCGATCTTCACCACCAGAGCTCATGTCTTCCAGATTGATCCCACCACTAAGAAGAACTGGGTTCCCGCCAGTAAACAGGCCGTTACCGTCTCGTACTTCTATGACAGCACACGCAACAGCTACCGCATCATCAGTGTGGacgggtcaaagGTGATCATTAACAGCACAATCACCCCCAATATGAACTTCACTAAAACATCGCAGAAGTTTGGCCAGTGGGCTGACAGTCGTGCAAACACAGTGTTTGGACTCGGCTTCGCCTCTGAACAGCAGCTGTCAAAGtttgctgAGAAGTTTCAGGAAGTCAAAGAAGCTGCGAAACTGGCCAGAGAAAAATCTCAGGAGAAGATGGAGACGTCCAGCGATCAGTCGCAGGAATCTGGCCGTGAAACTCCATCAGGCAATCAAGCATCCAGCATCAATGGAACAGACGATGAGAAAATCTCACACGTGCCGGACACCACAGCGCTGAAGAGTGAGAACGACCGGCTGAAGTCTGTAGCGGAGCAGAGtaaGAAGCTGGAGACGGAGCTGCAGGCTCTGAAGGACAGCAACGCTCGACTGATGGACACACTGCAGGAGGCCAACAGCAGCGCAGAGAGCTGGAAGAGCAAAGTGACGCAGAGCCAGGACGAGAACAACCAGCTGAGGAACAAGatctcGGAGCTGGAGGTTCAGTGCAAGGAGGTAAAtctggagaaagaaagaaacactcAGCTGAGTCTCAGAATTCAAGAACTGGAAGCAGATCTGCAGGAAAAAGAACAGGAGCTGGAGGATCTGCGCAAACAGGCAGAAACCATCCCACAGCTTATGGCCAAATGTGAAAGTGTCTCGGTCAAACTACAGGCTGCAGAAACGGCCAACAGGGACCTGAGTGAGAAGATGACACTCCTGCAGAGCGAGATCGACGACAGCGAGCAGAAACAGAAGAACATGAAGAGCGAGCTCAAGAAGTTCATGGACGTTCTGGACGGGAAGATTGATGAGCTCCATGAAGTTCGTCAGGGCATTTCTAAACTGGGCGTCGataactgaacacacacacacacacacacacacacccctctctctcacactcatactcacatacactctctctctctctctctctctctctctctctctctctctctctctttctttcactgGGCTCCTGtcccgtgtgtgtttgtgatcttTTGACTGATGGTTAAGGGCTACTGATGGTCAGCGAggagcttctctctctctctctctcacacacacacacacacacacacacacacacagactgaaagGTAAATTTAACCGCTGCAGATCTCAGGGCCGTTCAGATTGCTGATATGCACAAACACAGGTGAACTGCAGAATCACTAAGTGCCTGATGGTGGCGCTCTCTCTCCGCCAGCCCTCATAAACTCTTCTGACAATCGTCCTGTTTAACGCAAGGCGTCGAGCGGCTCCTCATGCAATACCCGCCTCAGGCTGCAGGACGcacttctcttcttcttcttcttcttcttctgcttcttctgttggtttgttttgtgtttttgagagTCACATTCAGATTATTCTTATTCTGATTGCTGAAAATATGAGCCAAATATCTGCTGTGATGAAGGCAGTTTGCTTGTTCGGTGCAGATGTGTGTGTCGTGCTCAGCAGTGTTTGTGATGTGCTCCTCCgcttgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgacgtttGGTAGATGGGATAATTTATACGTGTGCTTTTTTTAGAATAATCTCTGCCTTTCCTGAGTCTGTGATCAGAGTGCTTGAGCTTCCAAACTCTCTCCTCAGTTcctttcagttgttgttttcttgATGCTGTTTGAATGCTGTGGATGGTGTATTATGTGTTTAATGTGGGCAATTGTCTTGAACAccctctaaaacacacacacacacacacaccttactgAAACTTGAgccttttttccctctttctggaaagaaaaacttttgttgatcaaaattgtaaaataaaaaattgtggaAATCTAGTTTCTGAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187074 lncRNA upstream 127452 16208584 ~ 16211583 (+) True G126711
XR_006253180.1 lncRNA upstream 280061 16058534 ~ 16058974 (+) True LOC122362955
TU186957 lncRNA upstream 335217 15999452 ~ 16003818 (+) True G126626
TU186927 lncRNA upstream 510682 15825427 ~ 15828353 (+) True G126605
TU186908 lncRNA upstream 518705 15760963 ~ 15820330 (+) True G126591
TU187097 lncRNA downstream 6326 16355231 ~ 16361646 (+) True G126722
TU187095 lncRNA downstream 8565 16357470 ~ 16361646 (+) False G126722
XR_006253168.1 lncRNA downstream 27533 16376438 ~ 16378666 (+) True LOC122362848
TU187126 lncRNA downstream 56550 16405455 ~ 16406624 (+) True G126743
TU187101 lncRNA downstream 105092 16453997 ~ 16494634 (+) True G126723
XM_043216848.1 mRNA upstream 4575 16329709 ~ 16334460 (+) True hdgfl3
XM_043216847.1 mRNA upstream 4575 16329712 ~ 16334460 (+) False hdgfl3
XM_043264312.1 mRNA upstream 69776 16263839 ~ 16269259 (+) True LOC122362750
XM_043216900.1 mRNA upstream 220273 16115991 ~ 16118762 (+) True LOC122323208
XM_043264480.1 mRNA downstream 13340 16362245 ~ 16368810 (+) True LOC122362844
XM_043264478.1 mRNA downstream 13436 16362341 ~ 16368810 (+) False LOC122362844
XM_043264482.1 mRNA downstream 13437 16362342 ~ 16368810 (+) False LOC122362844
XM_043264481.1 mRNA downstream 13438 16362343 ~ 16368810 (+) False LOC122362844
XM_043264280.1 mRNA downstream 62460 16411365 ~ 16419019 (+) True zgc:158482
TU187112 other upstream 67768 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 283408 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 283408 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 385382 15952019 ~ 15953653 (+) False LOC122362954
TU186589 other upstream 1429359 14909198 ~ 14909676 (+) False LOC122322993
TU187265 other downstream 468826 16817731 ~ 16818399 (+) False G126820
TU187381 other downstream 725289 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 781017 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 781017 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 954915 17303820 ~ 17305974 (+) False LOC122322904

Expression Profile