RNA id: TCONS_00009869


Basic Information

Item Value
RNA id TCONS_00009869
length 312
lncRNA type lincRNA
GC content 0.46
exon number 2
gene id XLOC_005071
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2579237 ~ 2617510 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGACAAGTCGCATTCTTATAGCGAGTCAATGGATGATTCAAACAATGATTCACATGAGCCCTAAAACGCCTCTAATAACCCTGCTTGAAGCGAATTGCTGTTCTCCATCGACTTCATCGAGAGTTTTTGTCGTCGACGGAGTAATAGATGAAGATCCGTCCTGCTCTGGGATGATGCACTGATGCACTTCTCTGAGATGTTCGGTCCCCCCAGGAGAAGACCTTCATTGAAATGCTCCTTTGACTTGATCAGTCATGCTTCAGCTGCAGGTCAGTTGGCCTATTTTCTCTGATACTGCTGGAAGTGTTCCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011061 lncRNA downstream 99306 2136105 ~ 2479931 (-) False XLOC_005069
TCONS_00009864 lncRNA downstream 99306 2428300 ~ 2479931 (-) True XLOC_005069
TCONS_00011063 lncRNA downstream 99904 2239302 ~ 2479333 (-) False XLOC_005069
TCONS_00011060 lncRNA downstream 342144 2095436 ~ 2237093 (-) False XLOC_005069
TCONS_00011062 lncRNA downstream 342144 2232756 ~ 2237093 (-) False XLOC_005069
TCONS_00011064 lncRNA upstream 8159 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA upstream 28105 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00011066 lncRNA upstream 85845 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00009873 lncRNA upstream 239351 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011067 lncRNA upstream 664246 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00009865 mRNA downstream 56750 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009867 mRNA downstream 56750 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA downstream 61032 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009866 mRNA downstream 61059 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009863 mRNA downstream 627953 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009870 mRNA upstream 162680 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009871 mRNA upstream 162892 2780402 ~ 2800809 (-) True XLOC_005074
TCONS_00009872 mRNA upstream 232074 2849584 ~ 2869565 (-) False XLOC_005075
TCONS_00009874 mRNA upstream 289100 2906610 ~ 2940070 (-) True XLOC_005076
TCONS_00009875 mRNA upstream 333676 2951186 ~ 2993095 (-) True XLOC_005077
TCONS_00009859 other downstream 1088649 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 1956948 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1668856 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1678039 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1680347 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1680717 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2782170 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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