RNA id: TCONS_00011064


Basic Information

Item Value
RNA id TCONS_00011064
length 1182
lncRNA type read_through
GC content 0.41
exon number 4
gene id XLOC_005072
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2625669 ~ 2669500 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATGGGTCGTCTCGCCAATTATCATTGCACGTCCCAACCTCTTCATGATGAAAACAAACTCTTCAGCGGCACCGGCGGTCACACCACTGCCCTTCCAGGTCTGTTGTCACAGCATAAGGAAAATAAGGTCAAGCTTCCAAAGGATCTTATGCAACGCTATCTGCTGATTCCCTCCGGCCAATCAGAGGCGATGACTGGAGTTTTGTGAAATGCGTCTGATAAGAGGAATCATTTTTGGTGAAAGAAGCAGATCACGGGCCAGCAGTCTCAGCAGAGAACCCCTTTATCGACAATGGACAGATTCCACAGATGTCGAACATTCTTCATGCAAACCAAAGATGCAGATTAAGATGTTTTACTTTTAAGAGTCTCGTGGCTCCAAGAAGCGATTTTCGACCGTAATCTACCATATCCggagatataaaacagttcatcAATCACTATGAACAGACATTTGGACTCCTAATAAGCAACTCCTGCACCAAAACCACTGGAACGTCAACCACAAGGACGGACAACCAAAACTGCTGTCGTTTTGTGAGTGACAACCCTTCACCAGAGCACAAGAATCCGCCGCAATTATCTATAGCATTCATCTTCAGAAATCATCCTCAAAACCAGAAAGCAGTTCAATGCAGCAAAGGTTATAATTTATTGCAATTTTGCTGTCAGAGTAACAGTTTATTCACCAGGAGTTGGATGAAAAGCAGGTTTACGGTGTCAGAGGACATGCTGGATCATAGTCTGAAGTTATGAAGCTTGGCATGATCTATACGTTACAGACGGCGGTTTAACTTTGCGAAGAAGCAATACCAACAACAATCCTTCAAGATAACAGTCGAAAGgcttaaaacaaaaaagtttgatAGACGAATAAATCAAACCGTGTGCAAATTAAATTCATCTACTACACTGAGAGAATGTGAAATGTGCTGGATCATTTTTAGGATGGgggttttaataaaaaaaggtagAAATTTATGAGACCGATTTTGGAGTAGCTACAGTGTaaagaaatgctgggttgttgtaactcaatgttgggtcaaatacggACAAATGTCATTTAAGTTTAGCTGAAAAAATGTACCCAACATTgcattagtttattcattcattcattttcttttcagcttagtccctttattaatctgcggtcgccacagcggaatgaatcgcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009869 lncRNA downstream 8159 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00011061 lncRNA downstream 145738 2136105 ~ 2479931 (-) False XLOC_005069
TCONS_00011066 lncRNA upstream 33855 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00009873 lncRNA upstream 187361 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011067 lncRNA upstream 612256 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA upstream 612646 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00010793 lncRNA upstream 661530 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00009865 mRNA downstream 103182 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009867 mRNA downstream 103182 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA downstream 107464 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009866 mRNA downstream 107491 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009863 mRNA downstream 674385 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009870 mRNA upstream 110690 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009871 mRNA upstream 110902 2780402 ~ 2800809 (-) True XLOC_005074
TCONS_00009872 mRNA upstream 180084 2849584 ~ 2869565 (-) False XLOC_005075
TCONS_00009874 mRNA upstream 237110 2906610 ~ 2940070 (-) True XLOC_005076
TCONS_00009875 mRNA upstream 281686 2951186 ~ 2993095 (-) True XLOC_005077
TCONS_00009859 other downstream 1135081 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2003380 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1616866 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1626049 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1628357 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1628727 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2730180 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

//