RNA id: XM_043264821.1


Basic Information

Item Value
RNA id XM_043264821.1
length 4376
RNA type mRNA
GC content 0.56
exon number 18
gene id secisbp2l
representative False

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16592589 ~ 16610126 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTTCCGTCCCAGATGAgcgtcagtcagtcagtcagtcggTGACGGACCTCAGAACCGGAGCAGCACCGGATCATGCGCGCGCTCACCGCGTCCTGACAGCTGCACGCGGCTCGGTTCCGGTGTCGGCGAGCGAGATGGACGGAGGCGAGAGGAAGGATGTGAAGCTCTCTGCTGAAGTTGAACCGTTTATCCCTCAGAAGAAAGGTGCTGAAGCTTCATTATTACCCATGAGTCTGTGCGGTGAGGGTGGAGCTGAGCCCACACAAATCCCCTCCTACCTGATCACCTGCTACCCCTTCGTCCAGGAGAATCAGAACAACGgCCGGCAGCTGCCCATGTATAACGGAGATCAGCGCTGGCAGCAGCTCAGCCCGGGCCCCGGGGGGCCGTACCTGGCCTACCCGATCCTGTCGTCTCCGCAGGCCCCCGTGGCCAGCGACTACCCCGCATACTACCACGCCATCATGCCCACGCCCTGCCCTCCCGTCATGGGCTTCTACCAGCCCTTCCCGGGGCCGTACACGGGGCCCCTGCAGGCCGGCGTGCTCAACCCCGTCTCCGACTGCAGCCAGGCGCAGAGAGCGAGAGGCGTCTCACGAAACCCCGTCCTGCACAAGcagcagcagccagcGGCTCAGCCAATGAGAGCGAAGCGTCCCGTGATGCGGAGCGTGGCGGTACAGAAGGAGGTGTGTGCTGCCGGGCCTGATGGGAGATCCAAGACCGTGCTGCTGGTGGATGCAGCTCAGCAGACAGatttcCCTGGCGAGACGTCTGGAAGCGTCAGATGTGCGTCGGATCAGGCCAGTCCTCAGTGGAAGAATAAAGCCCGACGCAGACGCACCTCTCAGCAGGAGTCATCCAGCGAGCAGGGAGCCAGCGAGGCCGACATCGACAGCGACAGCGGCTACTGCAGCCCTAAACACAACCAGGGAGTCGCCAGCACCTCCAGCAACCAGCACTCAGCCGGAGCAgctGTAGACGCTGGCGTCATGACAGctGTTAGTTGGGGGAATGTAGCCTCACAGACCGTCCAGAAGCCGTGGGCAGACAGCAGGAACACAGCATATCACAGAGGAAGAACACCTGAGCAGAGGAGCTACACACAGGACTTCCAGATGAACTTTGGAGGTCATGCAGGAGGACTGAGATCGACTCAGACTTCAGAGACGCCCAACACACACCTCACACCTGAGCCACTGTACTTTCAgGATGAGGATGAGTTTCCTGATCTGGCCACCGGTGGTGCTGCTCAGCGGAATAAACCAGAACCAGTTCAGCCCAAGCTGCCCAAGAACCTGctGGATAACCTTCCGGAGAATTCTCCTATAAGCATCGTACAAACACCCATCCCCATCACCAGCTCCGTGCCCAAGAGAGCCAAGAGTCAGAGGAAGAAAGCACTCGCCGCCGCTCTCGCCACAGCACAGGAGTACAATGAGATCAGCATGGAGCAGAAGAAActacaggaggcTCTGTCTAAAGCAGCAGGTAAGAAGAGCAGGACACCGGTGCAGCTGGATCTGGGAGACATGCTAGCAGCgctagaaaaacaacaacaggccATGAGAGCGCGTCAGCTCAACAACACCAAACCACTGTCATACACCGTCGGGACCGTGGGCGCTCTGCACAGTAAAGACGGCGGCGGCAGTCGAGTGACGGGACTCAAAAACACTTACACCCCTCACAACATCCTGGACTCCAGCGCACCGCGCATcaagagagggaaagagagagagattcctAAAGTCAAGAAGACCACCGCCATGAAGAAGATCATTCTGCAGGAGCGTGAGGTGAAGAAGGGCAAGAGTTCTTCTGATCACAGCGTATCTGGAGCCGACGAGCAGAGAGACACCCTGAGCTTCACTGACCCACTCACACAGGAGCAGGAggagAACGGTCTGAGCGTGCCCAGTGATGCGTCTCTGTCTCCAGCGAGTCAGAACTCTCCGTACAGCATCACGCCCGTCTCTCAGGGCTCGCCCGCCAGCTCCGGCATCGGGAGCCCCATGGCCGCGTCCGCCATCACCAAGATCCACAGCCGCCGGTTCAGAgagtacTGTAATCAGGTGTTGAGCAAGGAGATCGACGAGAGCGTGACGCTGCTCCTGCAGGAACTGGTTCGGTTTCAGGAGCGGGTTTATCAGAAGGAACCCAGCAAAGCCAAAGCCAAGCGGCGGCTGGTCATGGGGCTGCGAGAGGTCACCAAACACATGAAACTGCACAAGATCAAGTGTGTCATCATCTCGCCCAACTGTGAGAAGATCCAGGCCAAAGgAGGTCTGGATGAGGCTCTTTATAACGTCATCGCCATGGCAAGAGAGCAGGAGATCCCGTTTGTGTTTGCTCTGGGTCGAAAAGCTTTGGGACGCTGCGTGAATAAACTGGTGCCGGTCAGCGTCGTAGGAATATTTAACTACTCTGGAGCTGAgtctcTGTTCAATAAGCTGGTGTCTCTGACGGAGGAGGCGCGGAGGGCGTATGAGGACATGGTGAGCGCTCTGGAGCAGGAGCAGGCCGAGGAGGCGCTGAAGAACGTGAAGAAGGTCACTCATCACATGGGTCACTCCAGAAACCCTTCGGCCGCCAGCGCCATCTCCTTCTGCAGCGTCATCTCCGAGCCCATCTCAGAGGTCAACGAGAAGGAATACGAGACCAACTGGAGGACGATGGTGGAGAGCGCAGACGCCCCGGAGCCGCCGGAGCCCGAAGCGGTCAGCCGAGCGAGCAGCAAGGAGCAGGCCGAGGTCAGCTGTCCGCCTCCGCAGCCGCCGGCCGCCCGCGCTCCCGAGAGAGAGGAGTCGTCCCGCTCCGATGACCGGCTGGAGTGGGCTTCTCAGCAGAGCACCGAGACCGGCTCGCTGGACGGCAGCTGCAGAGACCGCCTCAACTCCTCCATCACCAGCACCACCAGCACCCTGGTGCCCGGCatgctggaggaggaggaggaggaggaggaagaggaggaggactACCCGCCCGAGCCCATCTCCGTGCAGGTGCCGCCCCTCAGCTCCAGGATCGAGTCCTGGGTCAACAAGACCCTGGAGAACCTGCAGCTGCGCCGACAGAGCAGCAccgaggaggacgaggaggacgaGGAAGAGCGGCTGAGCGACGAGGAGGAGCTCGACGCCTCCGATCTGACCGAGCCGGCGGCCGAACGCAAGGACGCGGCGTGAGAGgtcaccttcacacacacacacacacacactgactcaggaacacacacacacactcgctcgtATCCGCTCGCTCTCCACACGCCTGACCTCGCCAGCACAGGTTTCAAATGATCTGAAATCGGGACAAAGAAAGGCATTTTTGCTGAAGCTGATTGCCTTAAACTTGTACGTTCTCTCAACGTGAGACTTTTTTACAGCACTGTAAGAAGAACCGAGGAAACCTAAGGGTTTAAGGCAAGCTGCTGTTTtcaaaaaactgagaaaactgaaaaaagaaagtcgggaactcaaaaatctgctgaagctgcTCGCCTTGATCTTTTACGTTTTCTTTctcagatgttttttgttttacagtgcaGACTTTAAGAGATCGTTCACCATCAGATCATCGTTGCTAACGTTCTGCTCAACACACAGGAATATATGAGTCGGACGTTCTGAGCGTTCGACCAGACTCTGGTGTGCAGGTTCAGTTATTTCACCAAAAGAAGCTATCCGTCGGCATTAAAGTGAAATACAAGACATAGGAGCCTGAGAAAAAGCCTCATTCTGGAAGAAACGCTCTGAATCAGAAGAACCACCATGAAGAAATGAAGTCAGGCGTGTTCAAAGTGAGCCAAGGATGGAGCGTTTTCTTCAAGCGTGGGCTCGTTCATTCCTCCACACTCGTCTgatctgtgtgtttctcttctGTCCGTGGCTCTTCTCCGGAAGCAGCGGCAGACGTCTTGAAGTGTGACTAACGAGGTGAAGAAACGAAGCTAGCCCGTGTAAATAACCCGTTTAAATGTCTCTAATCCTCCGTCGTCTTCGCTTCTGCTCTATTTATGGCTCTTGATCTGGGACGGATCTGTGGTGTGTGTCGCTCCCCGTCGGTGTTCGTCAGCGCTGGTAATCGTGCTCGTGATGCTGGTGTAAAGCGTGAGGATGTTCTGGAGCAGGATCTCGATGCAATAAGCGTCTGTAGCAGCTCACGgatccgctctctctctctctctctgtgtttggaGTGATCTTCATCGGCGTGTCTTTTGCACTATGTACATAAACGTGAACATGCTTTGGTAACTAATGTGAAACTAGTTTTCCGGCGGTTCTGATGGTGAAGTCTCAGCGTCTCTACATGCAGTAACTGTTCTCTGACTGATCGTTAATACAATAAACTGTTTTCAGTAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187167 lncRNA upstream 19059 16556719 ~ 16573530 (+) True G126771
TU187162 lncRNA upstream 32870 16553575 ~ 16559719 (+) True G126766
TU187183 lncRNA upstream 67482 16509735 ~ 16525107 (+) False G126779
TU187186 lncRNA upstream 68595 16509623 ~ 16523994 (+) True G126779
TU187194 lncRNA downstream 1055 16611181 ~ 16611475 (+) True G126786
TU187212 lncRNA downstream 62410 16672536 ~ 16673306 (+) True G126792
TU187247 lncRNA downstream 109370 16719496 ~ 16720130 (+) True G126813
TU187249 lncRNA downstream 113090 16723216 ~ 16723474 (+) True G126815
XR_006253127.1 lncRNA downstream 126597 16736723 ~ 16739370 (+) True LOC122362527
XM_043216893.1 mRNA upstream 41872 16536459 ~ 16550717 (+) True LOC122323202
XM_043216896.1 mRNA upstream 69906 16514170 ~ 16522683 (+) True slc30a4
XM_043216850.1 mRNA upstream 88124 16501934 ~ 16504465 (+) False mibp2
XM_043216849.1 mRNA upstream 88124 16501940 ~ 16504465 (+) True mibp2
XM_043264279.1 mRNA upstream 140471 16442480 ~ 16452118 (+) False usp8
XM_043264433.1 mRNA downstream 8044 16618170 ~ 16678066 (+) False fbn1
XM_043264432.1 mRNA downstream 8045 16618171 ~ 16678066 (+) True fbn1
XM_043264914.1 mRNA downstream 95455 16705581 ~ 16718158 (+) False myef2
XM_043264913.1 mRNA downstream 95459 16705585 ~ 16718158 (+) True myef2
XM_043264649.1 mRNA downstream 170556 16780682 ~ 16789673 (+) True larp6a
TU187112 other upstream 321322 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 536962 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 536962 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 638936 15952019 ~ 15953653 (+) False LOC122362954
TU186589 other upstream 1682913 14909198 ~ 14909676 (+) False LOC122322993
TU187265 other downstream 207605 16817731 ~ 16818399 (+) False G126820
TU187381 other downstream 464068 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 519796 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 519796 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 693694 17303820 ~ 17305974 (+) False LOC122322904

Expression Profile