RNA id: XM_043264968.1


Basic Information

Item Value
RNA id XM_043264968.1
length 3812
RNA type mRNA
GC content 0.52
exon number 18
gene id shkbp1
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 14911044 ~ 14921023 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAATATTCCGTGACAACATCCGCCCCTCCGCCGCTTCCTGACTACGGCTAGTACAATCAAGCGGCGTTTTATTATGAAGTTAATATCAACGCCTGCTTAAAAAGACGACAGACTATGAATGATTTACCTTAAAAGCGAAAACCATGGCGAGGATCGGCGACATCATTCATCTTAACGTCGGGGGGAAGAGGTTCAGTACCTCCAGACAGACTCTGACATGGGTTCCTGACTCGTTTTTCTCCAGtTTATTAAGTGGACGGATATCAACACTTAAAGATGAGACCGGAGCGATATTCATCGACAGAGATCCGTCTCTGTTTGCTCCCATTCTCAACTTTCTGCGCACTAAAGAGCTCCACCCCAGGTCCATAGACGTGCACTTACTAATGCACGAGGCAGAGTTCTACGGGATCACGCCGCTGGTGAGGAAGCTGCAGCTGTGTGATGAGCTGGACCGCTCCTCCTGCGGGAACGTGCTGTTCAACGGATACCTGCCTCCTCCGGTGTATCCGGTGAAGCGCAGAAACAGGCACAGTGTGGCAGGACCCCAGTTCATGGGGGGCCGCGCGGGGCCCGTGGAAAGGGCCCCTGTGAGGAGGAGCAACACAATGCCTCCTAACCTGGGCAACTCTGGCATTCTGGGTAAAGCCGTCATAGAGGAGAGAGTCCCAGGTCCGGTCTCTGATCCAGGCATGGTCCGAATCATATGTGGTCATCATAACTGGATAGCTGTGGCTTATGCCCAGTTTGTGGTGTGTTACAGGGTGAAGGAGTCGACTGGATGGCAGCAGGTGTTCACCAGCCCTCGGCTGGACTGGGTGATTGACCGAGTCGCTCTCAATGCCAAAGTCATGGGCGGTTCTCTAGGGGACAATGATAAGATGGTGGCCGTTGCATCGGGCACAGAGATCATACTGTGGGCCATCTGTCCCGATGGAAATGGCAGTGAAATCGGCGTGTTCAGTTTGAACGTGCCGGTGGAGGCTTTGTTCTTCGTTGGAAATCAGCTCATCGCCACCAGCCACACGGGAAAAGTGGGAGTGTGGAACGCTGTCACGAAACACTGGCAGAACCAGGATGTGGTTCCTATCAATAGTTACGACACAGCCGGATCTTTCCTCATTTTGGGATGCAACAATGGATCTATTTACTATATCGATGTCCAGAAGTTTCCGTTGCGGATGAAGGATAACGATCTGTTGGTGACTGAGCTGTATCGAGATCCCAGCGAAGATGCTATCACTGCTCTGAGCGTCTACCTGACGCCCAAAACAAgTGACAGTGGGAACTGGATCGAGATTGCGTACGGCACTAGTTCAGGAACGGTGCGTGTCATAGTGCAGCATCCGGAGACCGTGGGGTCCGGTCCACAGCTCTTCCAGACCTTCTCCGTTCACCGCAGCCCTGTGACCAAGATCATGCTGTCTGAGAAACATCTCATCTCTGTGTGCGCAGACAACAACCACGTCCGCACCTGGACGGTGACCCGCTTCCGAGGCATGATCTCCACTCAGCCCGGCTCCACGCCCCTCACGTCCTTTAAGATCCTCTCACTGGACGATATCGACGGCCACGGAGGCTGCGCTGCTGGCACCGAAATAGGGCCGTACGGAGAGCGTGACGAGCAGCAGGTGTTCATCCAGCGCGTGGTTCCCGACACCGATAAACTCTACGTAAGGCTCTCCTCCAACGGAAAGAGGGTGTGTGAGCTGCGTTCGGTGGACGGGACGTCAATCACGGCGTTTGTGGTGCACGAGTGTGAGGGGTCCAGCCGCATCGGATCCAGGCCCCGCCGGTACCTCTTCAGTGGACACGGCAACGGCAGCATCCAGATGTGGGACCTCACCACGGCGATGGAGATCGCAGGGAAAGTGGATATCAAAGCTCTGGGCGGTCCCACTGAAGAGGAGTTACTGGAGCTTTTAGACCAGTGTGATCTGGCACTGACCCGGACACCAGACATGAGTCCTGCAGCCTCCCTCACACACTCCTCACGCACCTCCATgtgcagCCTTCAGTCTCAGTTCAGTGAAATGAGTCGAGCTGCCGTTGGTTTCCGGGGTCCGGTTCCTCTGACCGGCAGTCTGCCCCGTCAGGCCCCGCTGGTTCCCCTCAGCAAACCGCCGCACCTCGGCCTCAGCCAGTCGTCTCTGGCCAGCAGCGACGGCCTGGGCTCCATCCGCAGGGGCAGCTTCGTGGAGCGCTGTCAGGAGAGAGCTAAGAGCTCGGACGCGGCCGGCCTGGACGGGGGCAGACGCAGCTTAGCCGTGTGCAACGAGCTGGAAGCCCGACTCGGCCTGAGAGCGCAGCCGCCGTTCTCCACACCTCCGTCCTCGTCCTCGGCGGCGGCCATGAGGAGACCGGCTTCGGCAGCACCGAGTCCTGCTCCTTCACCCCTCAGTCCAGCCAGGTCACAGACGCCCTCGTCTCCGAGGCGACCCCTGACCTCTCCCACCGGCGAGAGCCCATCCAATGAGAGCGCACCCGGGCAAGAAAGCCCCGCCTCTGCATCGTCCACCAGCCCCAAACCTCACATGAATGAAACCAGCTTCTGAGAGGAAAGtagacacagaaaaaaaaaaaaatcgaattttTTACCCGGCGACAGAAATGCAGAATTGAAAAGTGTTACACACAAGTAACTATATGCGTACTTCTTTTAGAGCAGTATTCTTAATATCAGAACATGCGCGCACACAATTATAAATCGTTCATTTCTGAGAATAAGATTGTATCAGTTCTGAGCATAATTTATGTATGATGTTATTCGCGAAAACGGCATGATTTCGCATTCTGAATCATGCCGAAACGTCGTAGCATTTACAAAACGTTTCTTTTAGAACAGTGTCCTCGGTATCACAGGGTGCCTTATAATACAGCGTCAAGACGTTATGAAAGTATGCAGatgagagggggaaaaaatcccTTTCAACGaggcttcaaaaaaaaaacgttgcgGAAAAAAGTACTTTTCGTTGGTACGTTTGTGGCAGATTTATCACgtagggggaaaaaatgacTGGCATGTTAAAATACTTCCCAAACTTATGCAACTAAACGTCACTGGAAAGTCAAAACACTGGCTCTGATGCTGTTCGAACTGGGATGGGGCCGGGGCTGCGCGTTCAGCCAGCCAATGACAGGATAGGGGCGTGTCTCGCGCCGTCTTCTCGAGGCTGTGCTGTTTAGGGGCTGATACCGCTGCACCGACAGGCTTACAATCACTAGACTActgtatttattacagtataacGGTAGCAACTAAACCTATGcttgttttacagaaaatgcGCATTATAAATGAATAGGACCACTGCATATATTATGacaatgatattaaaaatatatatcgcTGTAAAGAAAACTTTATGTGTGTACTAAGCGGTTTACAGGTGGTTCTtctagaacaaaaataaatgagcatgtaaaaaaacaacaaaaaaacccgaTGTATGATATGAAGAGGAAGCCGGTGTCTGTAATGCTGGCAACACACTGTATATTTAATCAGCAAACGTTCCACACAGTTTGCAGTAAAACACACACGAGCACAGACTGAAGCTCAGCTGCCGCTTTCCGTTACGCCTCGGAGGACTGTTGTGTGTAAATGCTGTCGGGGACCGGTGTGCCTTTGAGATGGTAAACACGGGCTGTTACTACAGCGCAAACAACAAGTGTGTCTGAATGTTCACTCTACTCATATCATCTCTGTTCAGTATTTTATCTCGTTTATGACAAGCTTGAAGGTTTGGtggtttttttacattaacggtgtcattcataaataaatctgaaactCTCTTTTTCCATA

Function

GO: NA

KEGG:

id description
K21953 SHKBP1; SH3KBP1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186590 lncRNA upstream 887 14909829 ~ 14910157 (+) False LOC122322993
XR_006246940.1 lncRNA upstream 167600 14740786 ~ 14743444 (+) True LOC122323060
TU186500 lncRNA upstream 440029 14470760 ~ 14471015 (+) True G126285
TU186468 lncRNA upstream 468541 14375565 ~ 14442503 (+) True G126262
TU186455 lncRNA upstream 790194 14120193 ~ 14120850 (+) True G126251
TU186586 lncRNA downstream 11298 14932321 ~ 14984748 (+) True G126347
TU186584 lncRNA downstream 15902 14936925 ~ 14937634 (+) True G126345
TU186722 lncRNA downstream 114360 15035383 ~ 15047877 (+) False LOC122362588
TU186725 lncRNA downstream 145323 15066346 ~ 15066577 (+) True G126458
TU186908 lncRNA downstream 839940 15760963 ~ 15820330 (+) True G126591
XM_043216605.1 mRNA upstream 903 14906616 ~ 14910141 (+) True LOC122322993
XM_043264627.1 mRNA upstream 9637 14871768 ~ 14901407 (+) True ppp1r37
XM_043216812.1 mRNA upstream 60668 14843211 ~ 14850376 (+) True bmp16
XM_043264096.1 mRNA upstream 83366 14826788 ~ 14827678 (+) False gemin7
XM_043264097.1 mRNA upstream 83366 14826865 ~ 14827678 (+) False gemin7
XM_043264122.1 mRNA downstream 114366 15035389 ~ 15047893 (+) True LOC122362588
XM_043264103.1 mRNA downstream 131021 15052044 ~ 15064838 (+) True si:ch211-136a13.1
XM_043216733.1 mRNA downstream 145839 15066862 ~ 15072223 (+) True yif1b
XM_043216734.1 mRNA downstream 145840 15066863 ~ 15072223 (+) False yif1b
XM_043265083.1 mRNA downstream 511933 15432956 ~ 15442131 (+) True dusp8b
TU186589 other upstream 1368 14909198 ~ 14909676 (+) False LOC122322993
TU186588 other upstream 2561 14907267 ~ 14908483 (+) False LOC122322993
TU186575 other upstream 82752 14826881 ~ 14828292 (+) True gemin7
TU186297 other upstream 969675 13940095 ~ 13941369 (+) True G126146
TU186336 other upstream 998244 13909564 ~ 13912800 (+) True G126175
TU186953 other downstream 1030996 15952019 ~ 15953653 (+) False LOC122362954
TU187042 other downstream 1131855 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other downstream 1132106 16053129 ~ 16055627 (+) False LOC122362745
TU187112 other downstream 1343735 16264758 ~ 16271267 (+) False LOC122362750
TU187265 other downstream 1896708 16817731 ~ 16818399 (+) False G126820

Expression Profile