RNA id: TCONS_00011066


Basic Information

Item Value
RNA id TCONS_00011066
length 1140
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_005073
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2703355 ~ 2744641 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAAATCGGCCTTTATTAATACTGTGAAAAAAGTCAACTTTATGAGCCTTTCAATAGATGCATCAGTATCGCTGTTAATACACGAACTACATCATAacacaaaataattgtgatttataACTCTGGTATCAACGTTTTGGTGTGGAATAGTACAGGTCACAATGTTTCAAATGGTCGGCACAAGcgaataaaacaaactaaatagcaTCATACTGTAAGATAGCTTGCGTTACATCTCATCTGAATAAACCGTGGAGTTTTTGCTTGTTCACAGCTGAGCACTTGTTCTCTTTGAGGAAACCAAATCATGCATCTTTTAGGAAATACAGTGCTACTGTATCATGATGTATaaaaggaaggacagtttaaacgtaacaaaaacaaacacactgaagGCACTGGCTGTTATCTGAGGCTAaatgattatcttttttttttcattttaatgtttttggttTCATGCACAGTGTCCTGGTTTGACACCTTGTCGTATTCAAGTACCTTCCTTCAGGCGTGGGGATAATAAATTAAATGCTGTGAACTGCCCTGCAGTTGCAATATGTTTATGTTTGATGAGGAAATGCTAAGGAAACACGATGAATATCAACATACGTACAGTATAGTTGCGGAATACAGAGAACTGACCGGACTTTGCATTTAGAGGTTCAACCTTTACAATAAACAAACTTGATCCCAATAAACCTGCCAAGTACATTCCTGAATCATAAGacagaaaacattaaaaataacctaaaggggacctatttttcccatttttcaagatttaatataagtctctCATGTCTCCAGaacgtgtctgtaaagtttcagctcaaaacacccattagattatttattagcGCTTTTCAGAAtgttggattttctgctctgaacaaccAAGTCGCTGTTTTCGTGGCCTGTACCTTTAATGTTGGTTCTCTCTGCCCAcagttcccacatgcctgtcagagtgtgtctcAATCTCCAccctcggctgcatcagataaccgacagacatgaaggaagcagacctCACATAACGTTtgagagaaatactacaGAGGCTGATGAATGTTCCTCAAAACCTCTTCTCTGGAGCGGCGTGGGAGGACGATGTTTTTATAACACAGTCAACAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011064 lncRNA downstream 33855 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA downstream 45411 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00009869 lncRNA downstream 85845 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00009864 lncRNA downstream 223424 2428300 ~ 2479931 (-) True XLOC_005069
TCONS_00011063 lncRNA downstream 224022 2239302 ~ 2479333 (-) False XLOC_005069
TCONS_00009873 lncRNA upstream 112220 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011067 lncRNA upstream 537115 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA upstream 537505 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00010793 lncRNA upstream 586389 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00010794 lncRNA upstream 586389 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00009865 mRNA downstream 180868 2505519 ~ 2522487 (-) False XLOC_005070
TCONS_00009867 mRNA downstream 180868 2511879 ~ 2522487 (-) False XLOC_005070
TCONS_00009868 mRNA downstream 185150 2511927 ~ 2518205 (-) True XLOC_005070
TCONS_00009866 mRNA downstream 185177 2506126 ~ 2518178 (-) False XLOC_005070
TCONS_00009863 mRNA downstream 752071 1947882 ~ 1951284 (-) True XLOC_005066
TCONS_00009870 mRNA upstream 35549 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009871 mRNA upstream 35761 2780402 ~ 2800809 (-) True XLOC_005074
TCONS_00009872 mRNA upstream 104943 2849584 ~ 2869565 (-) False XLOC_005075
TCONS_00009874 mRNA upstream 161969 2906610 ~ 2940070 (-) True XLOC_005076
TCONS_00009875 mRNA upstream 206545 2951186 ~ 2993095 (-) True XLOC_005077
TCONS_00009859 other downstream 1212767 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2081066 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1541725 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1550908 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1553216 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1553586 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2655039 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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