RNA id: XR_006246975.1



Basic Information


Item Value
RNA id XR_006246975.1
length 129
RNA type snoRNA
GC content 0.41
exon number 1
gene id LOC122323236
representative True

Chromosome Information


Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 4742307 ~ 4742435 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGCACTGATTATATTATGTGGGTTGCCATTTATTGGCATTCTGCTCTCAATTTGGTGCAAGAGAAACCTCAGTATGCAGAAGGGTTGAACTAAGTAGTTTTGTTCCCTCTCGAGTACTGAGCACAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006246939.1 lncRNA upstream 50363 4688034 ~ 4691944 (+) True LOC122323045
TU183828 lncRNA upstream 264428 4476547 ~ 4477879 (+) True G124425
TU183831 lncRNA upstream 280183 4461845 ~ 4462124 (+) True G124427
TU183657 lncRNA upstream 558656 4182733 ~ 4183651 (+) True G124295
TU183656 lncRNA upstream 559916 4181385 ~ 4182391 (+) True G124294
TU183914 lncRNA downstream 2325 4744760 ~ 4745307 (+) True G124497
TU183915 lncRNA downstream 3168 4745603 ~ 4745835 (+) True G124498
TU183916 lncRNA downstream 4070 4746505 ~ 4747183 (+) True G124499
TU183918 lncRNA downstream 4866 4747301 ~ 4748814 (+) True G124501
TU183917 lncRNA downstream 6960 4749395 ~ 4749694 (+) True G124500
XM_043216670.1 mRNA upstream 6840 4726450 ~ 4735467 (+) True lctlb
XM_043216674.1 mRNA upstream 16695 4723039 ~ 4725612 (+) True snapc5
XM_043264727.1 mRNA upstream 153605 4585189 ~ 4588702 (+) True aagab
XM_043216917.1 mRNA upstream 440429 4292237 ~ 4301878 (+) False kif23
XM_043216538.1 mRNA downstream 17193 4759628 ~ 4795836 (+) True LOC122322928
XM_043265035.1 mRNA downstream 572487 5314922 ~ 5318185 (+) True LOC122363106
XM_043216554.1 mRNA downstream 588768 5331203 ~ 5332855 (+) True LOC122322945
XM_043216555.1 mRNA downstream 604729 5347164 ~ 5350497 (+) True LOC122322946
XM_043216556.1 mRNA downstream 627650 5370085 ~ 5381964 (+) True LOC122322947
XR_006246981.1 other upstream 656 4741554 ~ 4741651 (+) True LOC122323242
XR_006246980.1 other upstream 983 4741255 ~ 4741324 (+) True LOC122323241
XR_006246974.1 other upstream 1342 4740868 ~ 4740965 (+) True LOC122323235
XR_006253139.1 other upstream 998551 3719888 ~ 3743756 (+) False nrn1la
TU183320 other upstream 1187617 3511966 ~ 3554690 (+) True tmem170a
TU183924 other downstream 17202 4759637 ~ 4793251 (+) False LOC122322928
TU183981 other downstream 329210 5071645 ~ 5110633 (+) True G124548
TU183987 other downstream 397055 5139490 ~ 5140671 (+) True G124553
TU184016 other downstream 483373 5225808 ~ 5226057 (+) True G124577
TU184019 other downstream 486128 5228563 ~ 5229946 (+) True G124580

Expression Profile