RNA id: XR_006247045.1


Basic Information

Item Value
RNA id XR_006247045.1
length 4404
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122323678
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 1966740 ~ 1973384 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCATCTAAACCCCGCCTCCAGCAGCTCGGGTCTCGGAAAGAGATCGGAAACGGTGTGTTTTGCCCTCAAACAAAGAACGAAAAAAGAGAAGTCCCCCCCCCGACCTGGATCTTTATCAGAGCATCAGAGATCAGTGGAGGGTGTAAGAAAGAGTGTGTTAGTGTGAACAGACCCTCCGGCTCTCACCTGCTCTAGTCATTTGCAGGAGGTCTTTGCTCATGGAGATGATTTTGGAAATAATGGAAGCAGCAGCAGTGTTTGGCACCTATACCTTCAAGTTTACGCTTCAAATCTATTTCAGTGTAGACGATGTATCACAAAGACATAGAGGGGGCCATTCTTTCGTGCCATTTCTTTGTGTATCATTCATAAAGCTTGCGTACGCTCAGATGTTAGCGTGCATTTGACGTGAAAAAGTGTTTAACGTCACGTCAGGGTCGTTACGCTGgtctaaattatgatgattggtgacattttatttgttagtgACATTAATTAGGAGTAATTTGCAaggcagagagctgaaaccatCAATTTCCGTTCAAGTTCTAGATCATTTGCCGTTCATAGACAGAGACCATTCTGTGAATCGCACGCGCGCCGAGTATACGATCAAGTTTAGGCTGGTTTCTGCACAAcctttttataaatgaggcccctgcaattaaatacaacatatttcaaaaccattttagaatatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtacagAGAGCCTAGAGGTCAGAAGGGGAGTATGAAACTCATCCCTAAGTGCCTCTGGCCctaaaatgtgattattatttatttttttaggtttttggaATCAACTCTGAACatcacaaaacaagcaaaacatttttgctatagttcatgctgcaatgcatgACGAGAGCCATGGATGTGTTTTGGTTGATTGGCTGCAACATGCTTTTTTGATGGTCACCACTGTTGTGACTCTCAAGCTGATTCTTGATGTCTGTGGCACCAACAGTGGTGTAATCAGCTCAATCTTGCCCCCTTGTGGTTTGTTATCACTGAAATATAAGGAgacaatattaattattaaacaatgcaaaagttGTTGTTAATGCCGTttcataatcaataataataacacaaatcaAACCAAATTtgctttgtcattttatttttagggtccaataacaaattgaaaaaaagatgATGGAACCTGATATTTGTactgattttctaaaaacagcAGCAAGATTGACCAAAGTGCTGTATAAAAGgccacagtaaaaataaaattcatggACATGTAAAAGACACAAAAATCCACAATAAATATCCAGTTAACGTTAAGTGTACGATCAGAACCTTCTTACAGTCCCTCGCTCAGACTGAAACATAGTTATGAAGGAATTTGCACACAAATAAGAAAATTGTAAAATCAGTTCTAAAGGGACAGGCAGCCAATGGCCCTCAGAATAGCAGAGACGTCTTTGCTTTTACAGCTTTCCTGTAGAAATCTGGCAACGGCATTCTGAAGCAATGAGCAATTTGTGAATATAAAAGGCTGACTTGAACATGCTAAAATTCATTTGGATAGACCTGTGGAGTTCTTGAATGGTTTATGAAGTGATGTGACCGGTGCAGGTAATGGGATTCTTGACTGTTTGAAGGATATTATGGATTCTTTGAAGTATCAGGCGATGATTTGTGAAATCAGTAGAGAGGTGACAGAAGCTCctacacacacagtgtttattGGAGGTTATAAAGAATAGAAGATTCTGCAACAAATTTGATTCATTACTAACATAACCTGAGATGTTGGGAAAACGTCTGTTAACTTATTTGTTAACGGTCGTAAAGCTTTGCATTTCAGCCCACCAAAACAGGTGCCTATATAAGTTTCAGCACAATCTTTTAAATAAGCGACAGTGTGCAGCTTATATCATGGTGTATGCAATGCTTGTGATCttatcattttgaataaatggaaacatttaaaattgaagcAGTTTCAGAATCAAAAGACAGAGCAGCAGCTAAATATGGGGGGGGGGAATGAAGGGGTGtgaatacttttgcaaggcacagtatgttttgaaaaatgtctaaagtggactgtcaacaACATAACTAATTCTCCTTCATTTTGAACTGCGTATCTACTAATTCTACGAACCCTACTCTGAGAGTGTttacatatacttgcaaagtttctgatactCAGTATGTTGCGGATCCAGCAAAATAAAgcgttagaagatattaagcagtcTTAATGCTTTCACAGAAGTATtaacagtctactaatactctgtTTCAGTTGTTCActtcagacattctactaacagtaactTTGTAACTTCATATCAACTAGCAgtcagtaaagtgttacctgtcCAGAGTGGTCTCATGGCAAGGCACTGATTCAATGTTGACATTATGGTATTAGATATCCCAGGAGGCCTTTGGATATATTGTGGGTTAAATGAGGTCCTCCAGTTCTAGTACATTGCAGGTTGGTGGTGATGTAACGTAAACTCACTGTTTGATTGGGACACATTGCCCCGGTCCCCACTGTTGTAGCTGCTGCTGGTCATTTGTTGCACTGTGGCCCTGCGGTCGCTGCGAACAACCTACGACAGATATCAGTGAGCTCTAAATGGCACACGGCTGAATGAGTTTGTCGTTTGGCCATCTGTGCACCACTTTTGATGCATGCTCATTACAGCAGCATGTGCACAAACCACAAGGTGCACCATTTCCGAGATGAAGCTCAGCGGTGCTGtaccattataatgtatattgGTTGCTGGTGGCCTACAAATTATCTGTGGGCCAAAAACACTTTGGTTTTTTcatcaactatatatatatattttacttttaaaggaTGTTCTGCAGATAAATTGGGTATCATCAGCATAAAATCTCTGGAACTAGAAACTAAATCCTACAgcaatgataaaaatacaaaattcatttgacctatttaacattttctgaaaaccCTACTTTTCCTGGAGGCCAACCTTCCAGCAGAATTTAGGTCTAGCTCTAAAACATACCTTAAATTGGCTAATCAGGGTCTTCAGATTGACTGGAAACAAACCAGCAGATGCTATGTTAAAGAATTAGCAGATTAAACATTTCGTGTTGTTAATTTTGACATAACACCTGTAatgcaaaattactaaaactgtaCCTAAAGGGGGAGtaactaatatttcacaatactaatatttttagtCCCTGGTaagcaaatattcaaacatcCTAGATtccaaatgttaaaaaaagcatgtctatccctttatatttgtacatttctctGTACATTTGTTCTTGTGACACATGGGAGCAAAAACGACTAAACACATGGAAAGAATGAGTTTagcatttatctgtttattttcttattttatatgtatttatattatatatttatatatagatatatagaaatCTAGCTATCATACAATGCTTTCACAGAAGAAGACTGACAGACTGGATTATGGCAACACAACAATGACACTGAGTGAGCCACAGGCCAAACAATGAGAGAGAAACACCAACACCAAACAAAAGATACTTCTTTTCTTGACTATTCACCGACCGCAGCTTTGATATCAAAACCGACCCGAGAAGAGTTCAGATGCCCAGAGCTGGCATGGTGATGAGAGGCATTGCCGGTGTTACTTGGTGGAGTTTTGGGTCGTTTCCCgtttcctcttcctgtctggTCCAGTGGCGCTCGAGTATGCACACTATTTGCTTACTGCAGCTGATCACACAGATATACAATTATTCTACAAGAACTTTCACTGAACAGACTTagccaaaagcaaaaaaaaaccatcattttgaaaaggaaaatgaacagaattacaattatttgaagaggaaaaaaaaatcgtcATAAATATTCAGCCTGAAATGATCACCCATACAGATGCGTGAAGGTGTCAGGTGTCAGTTAGGGTGTGGCCTATATTATGACATCGCTGAGGATGGCTTTGAGTCCCATCTGTACAGAGGAGAAGCGTGCACATGTCTTACAGTGATAAAACGAGTTACGTTCTACTCCTCTTTTGTCATTTAGCATCATCAAAAACTGTGTCATTACTAAAAGCCCTACGAATCAGGAAATATACAGAGATGTACCACTACGCAGATCTAAACTCAGAAACATACCCTATGCTAGAATGCAAACGCTTGGCCAAGCCTGCGGTCTGATTCGATCTCGTAGTTAACAAACACTCAAGCGGGCAACAGTCGACTTTCTGTGTTTGTGCTAATAATCCAAATGCACCACTAGTCAGGTAGAGAGCTATAAATGTGTCAACAGTCAACTAATTTCAAATTGCTCATCAAGACTCCCTTCAAGCTGTTGCTCCATCATTGCAGTAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191728 lncRNA upstream 1052 1870158 ~ 1965688 (+) False thrb
TU191670 lncRNA upstream 262208 1700588 ~ 1704532 (+) True G129795
TU191594 lncRNA upstream 433735 1532566 ~ 1533005 (+) True G129743
TU191531 lncRNA upstream 699730 1266709 ~ 1267010 (+) True G129701
TU191496 lncRNA upstream 1003880 957018 ~ 962860 (+) True G129675
TU191775 lncRNA downstream 84613 2056405 ~ 2056882 (+) True G129881
TU191780 lncRNA downstream 110486 2082278 ~ 2082620 (+) True G129886
TU191792 lncRNA downstream 168100 2139892 ~ 2141305 (+) False ppp1r8a
TU191825 lncRNA downstream 293425 2265217 ~ 2265435 (+) True G129916
TU191849 lncRNA downstream 371243 2343035 ~ 2343239 (+) True G129936
XM_043217709.1 mRNA upstream 1050 1886035 ~ 1965690 (+) True thrb
XM_043217710.1 mRNA upstream 1050 1886035 ~ 1965690 (+) False thrb
XM_043217711.1 mRNA upstream 1050 1886035 ~ 1965690 (+) False thrb
XM_043217920.1 mRNA upstream 267851 1674741 ~ 1698889 (+) True top2b
XM_043217921.1 mRNA upstream 267851 1674741 ~ 1698889 (+) False top2b
XM_043217492.1 mRNA downstream 15529 1987321 ~ 1990909 (+) True nkiras1
XM_043217493.1 mRNA downstream 15529 1987321 ~ 1990909 (+) False nkiras1
XM_043217495.1 mRNA downstream 15529 1987321 ~ 1990909 (+) False nkiras1
XM_043217494.1 mRNA downstream 15530 1987322 ~ 1990909 (+) False nkiras1
XM_043217491.1 mRNA downstream 15531 1987323 ~ 1990909 (+) False nkiras1
XR_006247023.1 other upstream 294399 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 860167 1072151 ~ 1106573 (+) True G129682
XR_006247126.1 other downstream 358349 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 814133 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 917897 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 998895 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 1121275 3093067 ~ 3093714 (+) True G130077

Expression Profile