RNA id: TU191780


Basic Information

Item Value
RNA id TU191780
length 343
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G129886
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2082278 ~ 2082620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctcatacttattcttattattattattattattattccggATTCCGGACAAATttcggcgcgtaactagtcccgcagtttttgccacacacccctgaaacgggcgtcaaatcgtgcggggtattgtggaaagatgtgctatgacttttataagcgatcgggcgtacgATTTTCGTACGccgggcgaaaaatcgggcgaaaaatcccatagacttaacattgcgccaaactttgacggatcgtagcgcagagcgagaatatcgcacagacttgtaaatcaccagatttgaagactttatcaagctgagcgagaacataccacacagtggggtaaaagttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191775 lncRNA upstream 25396 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 110486 1966740 ~ 1971792 (+) True LOC122323678
TU191728 lncRNA upstream 116590 1870158 ~ 1965688 (+) False thrb
TU191670 lncRNA upstream 377746 1700588 ~ 1704532 (+) True G129795
TU191594 lncRNA upstream 549273 1532566 ~ 1533005 (+) True G129743
TU191792 lncRNA downstream 57272 2139892 ~ 2141305 (+) False ppp1r8a
TU191825 lncRNA downstream 182597 2265217 ~ 2265435 (+) True G129916
TU191849 lncRNA downstream 260415 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 268678 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 296463 2379083 ~ 2379355 (+) True G129947
XM_043218516.1 mRNA upstream 50093 2026415 ~ 2032185 (+) True sf3a3
XM_043217493.1 mRNA upstream 91369 1987321 ~ 1990909 (+) False nkiras1
XM_043217319.1 mRNA downstream 20124 2102744 ~ 2115503 (+) True lin28ab
XM_043217846.1 mRNA downstream 37348 2119968 ~ 2130526 (+) False pdik1l
XM_043217847.1 mRNA downstream 37642 2120262 ~ 2130526 (+) True pdik1l
XM_043217844.1 mRNA downstream 52032 2134652 ~ 2141332 (+) True ppp1r8a
XM_043217845.1 mRNA downstream 52032 2134652 ~ 2141332 (+) False ppp1r8a
TU191722 other upstream 108894 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 409937 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 975705 1072151 ~ 1106573 (+) True G129682
XR_006247126.1 other downstream 247521 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 703305 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 807069 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 888067 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 1010447 3093067 ~ 3093714 (+) True G130077

Expression Profile