RNA id: XM_043217845.1


Basic Information

Item Value
RNA id XM_043217845.1
length 2805
RNA type mRNA
GC content 0.44
exon number 7
gene id ppp1r8a
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2134652 ~ 2141332 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAGCGAGATCTGGTAACGTTTACCCAGTATTCCCCGCGACCGCGCAAAATGGCGGCGAGCGCAAGCACAGACACAGCTGTCTTCGACTGCCCGTCATGGGCAGGAAAACCTCCACCTGGACTCCATCTGGACGTGGTTAAAGGAGACAAATTAATAGAGAAGCTGATCATCGATGAGAAGAAGTTCTATCTGTTCGGGAGGAACCCGGATCACTGCGACTTCACGATAGACCACCAGTCGTGCTCACGGGTGCATGCAGCGCTCGTCTACCACAGACACCTCAAGAGAGTGTTCCTCATCGACCTCAACAGCACCCACGGCACATTTCTGGGCAGAATCCGGCTCGAGCCCCAGAAACCTCAGCAGGTGCCCATCGACTCGACCATGTCGTTCGGAGCGTCCACGCGCGTCTGCGCGCTCAGAGAGAAGCCACAGACACAGGGCAGCTCCGGCGCAGGAGACAGCAAAGGAGTGGAGGACGAGGAGCTGAAGGGACTGCTGGGACTGCCGGAGGAAGAGACTGAgcttgagAACCTGACAGAGTTTAACACGGCTCATAACAAACGCATCTCCACGCTCACCATCGAAGAGGGGAACCTGGAAATCCAGAGACccaagaggaagaggaggagctcGCGGGTTTCCTTCAGCGAGGAAGAGGAGATCATAAACCCAGAGGACGTGGACCCGTCTGTGGGACGCTTCAGGAACATGGTCCAGACGGCTGTGGTTCCTATTAAGAAGAAGAAGCTGGAAGGCCACAGCACGCTGGGTTTGGAGGAAAGCGTAGCGCGCCGGTTCCAGAGCTTCCCGCTGAGCGCCGGGCTTTACGGAGACCTTCCACCGGCCAGCCACGAGGCCGCAGGACAGGGCAGCACAGGCCAGGGCTCGTCGGCCATCACCGGAGGCATGCCTCTGCCCTTCCCCAACCCCGCCCCGGAGGTGGACCTCACGCCCACCGCGCCGCAGCCGCACGCTGTCCTGAACCCCGCCCCTGCCCCGGCCCCCGGACCCTACTCGGCCGAGCCCTTCAACGAGCCGCGCAAGAAGAAGTACGCCAAGGAGGCGTGGCCTGGGAAAAAGCCCACCCCCTCGCTGCTGATTTAACAGGGATGCTCAAACTGTGACAGATCTGAGGATTGCGTTCTTTTGAAGTTATCTTTGCAACAGATacatgctgtcaaacgattaatcttaacagtttttgtttgcataatatatgcgtCTGTactactgtgtatatttatgcagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacagtgcacagatacatcatgtaaacaaaaatgcaattctCGTTCGACAGCATTACTTCATATTCATAACACTGCCTGTTTCAGCTCGAGGCTTTGCCACATGGGTTACTTATTTCAAAAAAGCTGCTGAAGTCGACATATAAACCGTGGTTGTATCTGTTCGGGCGAGCGAACATCACAAAGACCTATTTGGTTTTTACAATATCGCACgggaaatgttgtttttttgcattacaaaatCATTACACGTGCTCGTAATGGAAATCAcccataatgcaaaaaaaaagtcttggtAACACTTTGCAAACAGATCGTAGTAGCTAACGCACGAGCTAATGAGCTATATATCTGTTGCAACGTTTGCTATGTTCATCGTCAGTTCATCAGCTccatcataaataatattaaaagaaaaaacactaacGTTTTAGCAAATTCACTTAACTGAGATGCTTGTTATTTCAAATCGACTGACGCACAACTAATTTGCACGTACCAGATGAAGCGTTACACGATGaaatcttattgtaaagtgttaccgaaatctttgattttcttcatttataaTAACCTGGATACGGTTTTTGCTGAGTTTTCCCCACCTCGTGTTACAGGTTGATCGTTTCAGGCTTTTCAGAGATGAACCTCAGCCAGCTCCAGACGGAAAGCTTGGCCTCCGTTCAGTAGATGTGAGTAGGTGGTTTGGAGAAATGTCTTATGCAGCAACCACTGcgttttaatagaaaaatgtattgaatacatagattttgctttttttgaaaGCCTGAGAGCTTGTTTGCTAGCCAAGCAATTTTCAACTAagttagtttttaaaaagacgTTTTTcctgttgtgtatttaagtatgAATCGAACGTATTAACGTTTTTAGCTGCTGACGGTTTTCTTGAGAGTGTGTTACATTCAGGATGTTTTGAACTGTTTGGGAATATCGTGTCGGTTTACAGAGGGAAATGAGGACAAAGATTTGTGTCATTGAATGCAGGAAGCTGTCTTGTAATGTGAACTGTTTCGTtaacgtttatatatatatttttttatatcacgaGAGGATGGACTCGTCAGTGAAAAGCACAGGTGAAAAGACTAAACTTGAAAGGAATTATTATTGGATTATTTGTCTAATAAACAGCATTCCTCGCCCTTAATATGATACATGGCATGttgtttaagaaaatgttaagaAACGTACCATTGGTTGCAATATGAATTTGTGGAGGGTTGAAAAGTTAAAGATATCTGTGATGTTCTGGttgatagataaaaaaaatagataaaaaaagaagtaaataaaactgctgGCCAAGCAGTGttaggatttatttattaactagatgcatttatttaattaattattattaattatttctatGACCTTTTTGACATTTGAccagacaataaataaatcctttatttatgacatttgaccggaaaattaaataaatctttcttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191780 lncRNA upstream 52032 2082278 ~ 2082620 (+) True G129886
TU191775 lncRNA upstream 77770 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 162860 1966740 ~ 1971792 (+) True LOC122323678
TU191728 lncRNA upstream 168964 1870158 ~ 1965688 (+) False thrb
TU191670 lncRNA upstream 430120 1700588 ~ 1704532 (+) True G129795
TU191825 lncRNA downstream 123885 2265217 ~ 2265435 (+) True G129916
TU191849 lncRNA downstream 201703 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 209966 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 237751 2379083 ~ 2379355 (+) True G129947
TU191894 lncRNA downstream 587133 2728465 ~ 2734183 (+) True G129974
XM_043217846.1 mRNA upstream 4126 2119968 ~ 2130526 (+) False pdik1l
XM_043217847.1 mRNA upstream 4126 2120262 ~ 2130526 (+) True pdik1l
XM_043217319.1 mRNA upstream 19149 2102744 ~ 2115503 (+) True lin28ab
XM_043218516.1 mRNA upstream 102467 2026415 ~ 2032185 (+) True sf3a3
XM_043217491.1 mRNA upstream 143743 1987323 ~ 1990909 (+) False nkiras1
XM_043216947.1 mRNA downstream 12503 2153835 ~ 2181727 (+) True foxo6b
XM_043218231.1 mRNA downstream 169938 2311270 ~ 2318033 (+) True ctps1a
XM_043218444.1 mRNA downstream 181069 2322401 ~ 2327881 (+) True rab42a
XM_043218125.1 mRNA downstream 190401 2331733 ~ 2341123 (+) True gmeb1
XM_043218123.1 mRNA downstream 190401 2331733 ~ 2341123 (+) False gmeb1
TU191722 other upstream 161268 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 462311 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1028079 1072151 ~ 1106573 (+) True G129682
XR_006247126.1 other downstream 188809 2330141 ~ 2330276 (+) True LOC122324256
TU191918 other downstream 644593 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 748357 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 829355 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 951735 3093067 ~ 3093714 (+) True G130077

Expression Profile