RNA id: TU191830


Basic Information

Item Value
RNA id TU191830
length 325
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G129920
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2311285 ~ 2312455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTCATACGGCGAGAAGGTTCCCGCATCGATGTTGATGTACGGGTCGATCTTGATGGCTGTGACATGCAGGCCGCAGGACTTGAGGATGGTTCCCACACTGCTGGCTATAATGCCTTTCCCGATGCCTGAGATCACACCGCCCGTCACCAGAATATACTTCATGCTGCCAATCACACCCTGGATGTAAAATACCGGACCGTCCTGGTGCGACAGACCTACCACGATATCTCGAAAGCGCGAAACCCGTTGTTAAAGCGATAACAAACGTGTTCACATCACACGTGCTGCTCGACCTCAGAGTAGCGGAACACATACGGCGAGCC

Function

GO:

id name namespace
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191808 lncRNA downstream 170311 2139878 ~ 2140974 (-) True G129902
XR_006247054.1 lncRNA downstream 182173 2122686 ~ 2129112 (-) True LOC122323752
TU191783 lncRNA downstream 208181 2102703 ~ 2103104 (-) True G129889
TU191781 lncRNA downstream 228543 2082234 ~ 2082742 (-) True G129887
TU191769 lncRNA downstream 284083 2026237 ~ 2027202 (-) True G129876
TU191832 lncRNA upstream 5699 2318154 ~ 2320104 (-) True LOC122324052
XR_006247097.1 lncRNA upstream 5702 2318157 ~ 2320083 (-) False LOC122324052
XR_006247098.1 lncRNA upstream 5702 2318157 ~ 2320037 (-) False LOC122324052
TU191851 lncRNA upstream 31797 2344252 ~ 2344505 (-) True G129938
TU191856 lncRNA upstream 38823 2351278 ~ 2351489 (-) True G129943
XM_043217738.1 mRNA downstream 52851 2253838 ~ 2258434 (-) True cited4a
XM_043218164.1 mRNA downstream 249560 2060114 ~ 2061725 (-) True LOC122324005
XM_043217488.1 mRNA downstream 306251 1991179 ~ 2005034 (-) True ube2e1
XM_043217490.1 mRNA downstream 324096 1983801 ~ 1987189 (-) True rpl15
XM_043217707.1 mRNA downstream 332945 1970767 ~ 1978340 (-) True nr1d2b
XM_043217017.1 mRNA upstream 421281 2733736 ~ 2736130 (-) True stmn1a
XM_043217207.1 mRNA upstream 430131 2742586 ~ 2751533 (-) False LOC122323398
XM_043217009.1 mRNA upstream 564469 2876924 ~ 2884651 (-) True maneal
XM_043217092.1 mRNA upstream 691537 3003992 ~ 3022358 (-) True oprd1a
XM_043217090.1 mRNA upstream 1000934 3313389 ~ 3323828 (-) True LOC122323345
TU191589 other downstream 811879 1498688 ~ 1499406 (-) True G129738
TU191574 other downstream 1024645 1283887 ~ 1286640 (-) False pef1
TU191551 other downstream 1030823 1278912 ~ 1280462 (-) False smim12
XR_006246987.1 other downstream 1216382 1072151 ~ 1094903 (-) False LOC122323272
XR_006247127.1 other upstream 6072 2318527 ~ 2318597 (-) True LOC122324257
XR_006247128.1 other upstream 6517 2318972 ~ 2319048 (-) True LOC122324258
XR_006247129.1 other upstream 6781 2319236 ~ 2319373 (-) True LOC122324259
TU191907 other upstream 427549 2740004 ~ 2751570 (-) True LOC122323398
TU191925 other upstream 512889 2825344 ~ 2832956 (-) True G130000

Expression Profile