RNA id: TU191939


Basic Information

Item Value
RNA id TU191939
length 1888
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC122323290
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2885413 ~ 2887628 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTGACAGTGACCTTGATCCCAGGACCAAAGATGACTTCTTAAAATATTTCCATCTGTTCACTCTGGATTCAAACACTGCACACAAACACCTCTATTTCTATGACCTGCGATCGGTGGAGTTTAATCACCACGTCCAGACGTATCCTGaccatccagacagatttgacgTCTATCCgcaggtgttgtgtagagagagtgtgagtggacgctgttactgggaggttGTGTGGAGTGGGACTGAGTTTTGTAGCGGTGTGAATATATCAGTGTCGTACAGGAGCATCAGCAGGAAGAGATCTGGTCACGAGTGTTTCTTTGGAtataatgatcagtcctggagtttgtcCTGCTCTCACTCCAGTTTCTCTTTTTggcacaataacaaaaaaactgacCTCCCTGTTCCCTCCAGCCGCAGTAGaataggagtgtatgtggaccACGGAGCAGGAACcctgtccttctacagcgtctctgactCAATGAgcctcatccacacagtccagaccacattcacccAGCCGCTCTATCCTGGGTTTTATGTCTGTGGAAGAGTGGATCTCGTTGTTTTAACTGatgattttaacttttaataccAATCACGTTGTCGAATTACACGAGTCTTTGAGCTGCATGAAAAATCACGAGATGTTTTAGTtaggttagttttttttttataaacaaaaaaaagatacacaCGATACGTGAGAAAACTGCATCTTTTACCGTTcatcttcattcattcattcattcattcattcagttcattcattcaaagtgttgagtaaatgtattcaaatactacacacacacacacattcacacactcatacttacatatgtgttttttttggactaaatggtttttaaaaataaaaagcagcgtAGACAAAGTCAATAGAAGGCAAGTCTGCAGCCTTTAACATCCAAAAATGTTGAAGGCTAATGCTTCCGCTTTAGTGGCCGTTTTTTAATGGATTTCAATGGAGTTGATTAAACAGCTTTTTAGAGGAAACTGCTTATCGGCTAATTTTTAACAAGTTTTACACTAAACAGTACTTTTGGATTGAACTCATTTTTATAGTTTGCTATCATATGAGAAGTCACTGACGTTTTAAATTCCTATGGTATCCGTAAGCAGCGACGGAGAGTCTCAGAATTCTGTCTGAAATTCAATGACGTCAAGGTTGTAATGTGATTACGGTTATAAAGGCACATGTGTTACACTTTTACCAATAGTAATACAGACCCCCTCATCTGCCCGTAATGAGATCGTAAGACAATCTCTCGTACAGAATCCCTGCTCCGCCATGTTGCTATCAGCGTTGCCAGATTGTATGGACAATTTACAGCCTAAAAGCCAAAActttaactgttaaaaaagtGTGATCGATTACAGTAGAAATAACGGATCTGATTTTGAATGTATGACTGTATTTAGAGATCATAACTTGATAAAACTTGGCTAAAAAACCCATCGCTCGTGAATCATCccttgtgattggctgaaacCGCAGCAGGGATGTCAACATCAGCCGCAGTCATCTTGTGTGTTTAGTAACGTCGTGATGACTGATGGCACGCAGCACATGCCCACTTGAGCTCGTATGTGAACCAATAAGCATATACAACACTAATTCTGTCCGGCATTAAATTGCCGATATTAAACCGTTGCTGTCAAACAGTTGCCATGCCAACCTGCTACCATACGCAAAAGCTGTGTCAAAAGGTTAGGCTTTCCTCGGGCTTCATGTGCAAAAAAGTACATACACTTTGCACGGTTTCATTATATGCTACGGATGGGTGAACGAAACTGTATTGAACTGTCACTGTATGCAAATGTATTCCTTCACGCAAGCATATTGTAATAAACTTTTCTGCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191899 lncRNA upstream 99644 2754024 ~ 2785827 (+) True G129979
TU191894 lncRNA upstream 151288 2728465 ~ 2734183 (+) True G129974
TU191860 lncRNA upstream 506116 2379083 ~ 2379355 (+) True G129947
TU191855 lncRNA upstream 533906 2351298 ~ 2351565 (+) True G129942
TU191849 lncRNA upstream 542232 2343035 ~ 2343239 (+) True G129936
TU191940 lncRNA downstream 5300 2892904 ~ 2893492 (+) False serinc2
TU191946 lncRNA downstream 28341 2915945 ~ 2916411 (+) True G130015
TU191948 lncRNA downstream 34561 2922165 ~ 2922620 (+) True G130017
TU191951 lncRNA downstream 39684 2927288 ~ 2927504 (+) True G130020
TU191955 lncRNA downstream 42823 2930427 ~ 2933709 (+) False G130022
XM_043218195.1 mRNA upstream 320915 2380621 ~ 2564556 (+) False ptprua
XM_043217923.1 mRNA downstream 2019 2889623 ~ 2893601 (+) True serinc2
XM_043217777.1 mRNA downstream 6940 2894544 ~ 2914709 (+) True hivep3a
XM_043217778.1 mRNA downstream 8558 2896162 ~ 2914709 (+) False hivep3a
XM_043218258.1 mRNA downstream 31764 2919368 ~ 2922019 (+) True edn2
XM_043217091.1 mRNA downstream 71989 2959593 ~ 2978416 (+) True phactr4a
TU191918 other upstream 99123 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 555195 2330141 ~ 2330276 (+) True LOC122324256
TU191722 other upstream 912087 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 1213130 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1778898 1072151 ~ 1106573 (+) True G129682
TU191942 other downstream 2085 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 83083 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 205463 3093067 ~ 3093714 (+) True G130077
TU192216 other downstream 872263 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 1357164 4244768 ~ 4259085 (+) True G130372

Expression Profile