RNA id: TU192139


Basic Information

Item Value
RNA id TU192139
length 3229
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G130148
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3537502 ~ 3540768 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCAGAACGGGACATTTGATGACGATGTGTGAATGAATTAGGAAGATGATGATACGTGTCCATTGGTTTCTGATGACCGTTCTCGTTGACGCAGGTTATGAAGaaatacattcaaaaaaaaaaaaaaaaatcaccataaCTGGCTTCTCGGgagaaaagaacacaaaatacaataaaaagttcAAGAAATCGAACAAAGCACGCGGTCGTCTTTCTTCACATTCCTATATTACAGTTCGGTAAGCTTATTgcattatgaatataaaactaCACGGTCATTCGTTAGGAGTAAAAAAAGGCCTTGAGTGTTTTCACCCTGTTTCTAGTGGTTCATGTGCTCTGCTGAAGGCCTGACGTTATCAGgataaaatcaacaacaaaagcaTTCTGCTACTCATATTTAACTAACGCTCAGCAGCCATTGTAAACAATGCATCTAGTCAAGCAGGCattctcccacacacacacacacactccacaatGCAAGATTGCAAAGACTTCAacctcattttaaaatatgaatttgattATTAGCAGTAAAACCCAGAACAAACAACTTTTGAATGCCAACCACCAGTATTAGACTTTGTGAGcatcagacacactcacacagacttTCAGagccaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcacacacgctAATGCAGCTGCAGGAGGTACGAGGTGAcagcttcattattattaaaaatctgCTTGTTTTTAGTTGTGCAAAGTTCATGTAATGACGAGCTTAAACGGCAGCgcacataaaaaaaacgtttgcaGCACTTTTTTACGCACGGGCAAAACCCACAAAAACGCTAATAAACCTGttgcaaaacaaacaatcaatcaatcaagcGTCCACGTGCgctttttaaaagcactgatGGCGAAAATTATCTAAGAAAAATATAACATCACACGAAAAATGTTACGTTCATTAAGCCATTTACAATCATTCAGTGTTGACTACTTCCATCTCTTCAACTCTGTTAGTTAtgaatttggtttatttttttggagaacaacaaaaaagaaaaaaatggctaaatataaaatgtaaaaaaaaaaaaaaaaacgtacaaaataatgattaaatttCTCAATGTTTACAAATAATCGAGCGTCGACTACAATTGTAAAACTCCATTTGCGGCCCTGctaattatagttatattttaggATTTAGTAAGAAATGatggaaaaaacaaactaaactttacattttacaaatttttttcaAGCCTCGTTTTTGGAAGGTGGCAAGTGAATGTTAACAATAAACACACTGCAACCGCTGAAAGACCTCAGTGAATGAACCACGTTCTGCTTTTAGAGATTACCGAGAGGAAATGGGAACCGCTGGGCTGCCGTGAAGACCTCGACGGTCAAATGTGCTTCTGATCCACTGGTTCACGTCTTTGAAGACAGGAAGGCCGTCAAGTGAGAGCGTCACACTTCACACGGGCTCTCTAATGGGATCAGCTCTAGCCGGGGCCAGCAGGGGCCagtctccacacacacacacacacacacacacacacacaggcccaTCAGAAGACACTCCACCGACACAAAACACACTCGACTACCTGCTGCTCTTGGCAGAACATCCAAAGAGTGAGAGAGCGTGAAAAGAGgaacgaaaagaaaaaaacgtgAGAGGAGAGCAATAGTTAAAAGAGGGGAGTTCGGTGATTTTTCTCTTTGACGTGAAACAAAGAGGGGATTTAATCACGCGGGAGTCATGGAAACGGGTTTGGTGTCCGGATCAGAGTCTAGGATTACGGGTCTGAAGTGCTCGCTTCATGAATACGGCCGGACCTCTGTGCTCTGGGTTACAGTAATAAAGGTTCGACTTTCAGATGTGCGAGTCAAACACTTGCGCACAAAACCACTAGCGAACAAAtagatatgtaaaaaaaataaataaaaacagctcgCGATTAGGacaatgaaaacattcatttttcgTTTCTTTAGttaattacaaatgtttattgtgttactgtaaaaatacagtaagagaGCGCATTTTGAGCCCAGGTTTAATCTTCGTCCTAATTATACACTAATTGAGCAATCTCACGACGCCCCGGATCAgaaggaaaatatattttgcattcaaaaaaatacaaagcctGTTAAAAGTCCCATgacaattaatattatttttttttacattaatgcaagtcctgcagttttttttatactgcaTTAAACACGATCGGTGCTACAAATACTGCAaggatgaataaatacaattaatctaattatatattaatataacgAATAACTAATATTTCATACAGTAGGAAATGTGCTTGCTTTCcacaagcaaaaaataataattaaacaggcttcattttttaatatctaaaacatttctctttttgaCTTTGGGGTGAAATAACGACCTGGAAGTGTTTCCAATCCCTGGATAATATACGGAACACAAATCCTGTtctcagttatttttttatatacgtGATATGATTGTTAAGACTAGGCATATTCTGCCCTTATACCAAGTCAATAGTTCAACGTACCCGTGATATCTCTTGCGAAAGCGAACAACGGAAgcattaaatgcatcatttaaaagTTCGGGAATGAAAGAGCAAAGCTTTCAACATCCATAACCCCTGCGATATAAATCAAGTGTTCCTCAGGACGAGTGTATATTAAAGGCATCATTTGCTCTCCTTCATTCCTAGTCTTCCTGTGCAGGATTTATTAGTGCATGTTAGAAAACTAAATGTCTCTTTCTCCTCTAATGAACTAAAACAGCGGCTAAATTCACCAAGGCCACTTCAATTTCAAGCTTTCACATTCACGTCTGCTTTGTTCTGCTATCGGAACGCATGCTTTTTTTCCTCCGATCAAGCCCTAGCCTACCTTTTGCACTTTTAAATGCGTCACATTCGACTTGAGAAAGCGCTTTCGTAATGGTTAATAAATTAATGCcgtaacaataaattatgcgaTATAATAAGAGCTGGCCGGGCAGCGCAAAGAATGCTTTTCGATACGTAATGCCAACAAGATTAGCTTATTCGTTAGCTAGCGATTTTTGAATGCTAATCTGCTCGTGTAAATAGAGTAGTGTAGAAAAACGATTACACTTTAAAGCATGCCAAGCCACGATATTAAAAGCTGCCAATAAAACGACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192166 lncRNA upstream 19104 3516460 ~ 3518398 (+) True G130168
TU192129 lncRNA upstream 38948 3496699 ~ 3498554 (+) True G130138
TU192132 lncRNA upstream 97315 3439713 ~ 3440187 (+) True G130141
TU192088 lncRNA upstream 169085 3353019 ~ 3368417 (+) True LOC122324184
XR_006247111.1 lncRNA upstream 170199 3365738 ~ 3367303 (+) False LOC122324184
TU192190 lncRNA downstream 31506 3572274 ~ 3576190 (+) False sh3bgrl3
TU192360 lncRNA downstream 357293 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 389445 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 404627 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 609909 4150677 ~ 4160027 (+) True G130336
XM_043218369.1 mRNA upstream 28791 3504109 ~ 3508711 (+) True nr0b2b
XM_043217196.1 mRNA upstream 46278 3486502 ~ 3491224 (+) True tbxta
XM_043217578.1 mRNA upstream 373860 3150077 ~ 3163642 (+) True LOC122323611
XM_043217091.1 mRNA upstream 559086 2959593 ~ 2978416 (+) True phactr4a
XM_043218258.1 mRNA upstream 615483 2919368 ~ 2922019 (+) True edn2
XM_043218501.1 mRNA downstream 26246 3567014 ~ 3570984 (+) True paqr7a
XM_043218084.1 mRNA downstream 31494 3572262 ~ 3576193 (+) True sh3bgrl3
XM_043216957.1 mRNA downstream 37210 3577978 ~ 3582390 (+) True trnau1apa
XM_043216958.1 mRNA downstream 37210 3577978 ~ 3582390 (+) False trnau1apa
XM_043218001.1 mRNA downstream 42326 3583094 ~ 3590653 (+) True stx12
TU192043 other upstream 443788 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 559086 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 644010 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 751154 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 1207226 2330141 ~ 2330276 (+) True LOC122324256
TU192216 other downstream 219099 3759867 ~ 3760985 (+) True G130208
TU192476 other downstream 704000 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 853817 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 919147 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 919147 4459915 ~ 4464590 (+) False znf706

Expression Profile