RNA id: TU192216


Basic Information

Item Value
RNA id TU192216
length 1020
RNA type TUCP
GC content 0.41
exon number 2
gene id G130208
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3759867 ~ 3760985 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtttttttttaatttttttattatttttgtatggaGAACTTTGTTGTAAAAAGACCATAAACTCTGCCCCAGCTTAACAACAACTATggtacatttctaaatatacaaTGCAAAGGCAAGGACATCTACTGTTGGTTTAATTTTACTCAGtctttgtgaataaaatatattgcaagcaaattttaaaataaaaacgctacaaaaaaaaaaaaacttgcgtCAAAGAAGAAAAACGTAGGGCAGAACGACATTTAGACACATTTAGACAAATCAgtctatttttgtctttttcaagaaaaatatgtaaaaacaagATGCACCGTTTTGCTTTACACAAAAAAGTAACATATTCAGACTTGTTTTCAGATATCTTGAATTTGGATTGTTTTCTTACCTCAACCacacattgtctttttttatagcACAAATCTAACCATTTAGAGACAAATTGTCAGcggggtttaaaaaaaaaaaaaaaaattaagatatatttttgttttaaaagatgtttagTTAGACTGGAAAAACAACGGCAattgggttttttgttttttttttaaacttaagaACGTGACCTTGAGCGGGACCGAGATCGGGAATAAGATCGCGAGCGCGAATGTGAGCGAGACTTGGATCTGGATCTGGATTCCCTCCTCAGATTGGCATCTGGTGGCGTTTGTGATCTGGATCGAGAATGAGCTCTAGAGCGGTGTGCCCTGTCAGCCGCCCGGCCTTCGTCGCCGCTCTTGTTTCCCTCCTGAGATTTGGACCCAGACTCTCTGGAGACGTCCCTGTCGTTCACCGATTTGGATCGAGATCTGGACCGGGACCTGGATCGAGAATAGGAGCGAGCCCTCTTGTTCTCCCGCTTGCTCTTTTTGCTCGGGGGGCTGCAGCTCGTGCTATTATCCCTAGCGCTTTCACCTGCCCTTCGAGCTCCATTACTGCTCTCCTCCATCCTACCGCTCCTGCCCTTCGCCTTCTTGCTGGTCGACCTGCTGCGTGACCGTGAGCCCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 183677 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 218473 3465239 ~ 3541394 (+) True G130150
TU192139 lncRNA upstream 219099 3537502 ~ 3540768 (+) True G130148
TU192166 lncRNA upstream 241469 3516460 ~ 3518398 (+) True G130168
TU192129 lncRNA upstream 261313 3496699 ~ 3498554 (+) True G130138
TU192360 lncRNA downstream 137076 3898061 ~ 4076098 (+) True G130313
TU192366 lncRNA downstream 169228 3930213 ~ 3935051 (+) True G130315
TU192369 lncRNA downstream 184410 3945395 ~ 3964718 (+) True G130318
TU192394 lncRNA downstream 389692 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 415283 4176268 ~ 4199257 (+) True G130338
XM_043217650.1 mRNA upstream 80494 3623775 ~ 3679373 (+) False epb41a
XM_043217641.1 mRNA upstream 80494 3627124 ~ 3679373 (+) False epb41a
XM_043217651.1 mRNA upstream 80494 3631071 ~ 3679373 (+) True epb41a
XM_043217640.1 mRNA upstream 80494 3631071 ~ 3679373 (+) False epb41a
XM_043217645.1 mRNA upstream 80494 3631071 ~ 3679373 (+) False epb41a
XM_043217736.1 mRNA downstream 79256 3840241 ~ 3852009 (+) True lrp12
XM_043217737.1 mRNA downstream 82692 3843677 ~ 3852009 (+) False lrp12
XM_043217925.1 mRNA downstream 98479 3859464 ~ 3862610 (+) True LOC122323814
XM_043217926.1 mRNA downstream 102243 3863228 ~ 3891965 (+) True LOC122323815
XM_043217928.1 mRNA downstream 288925 4049910 ~ 4053157 (+) True LOC122323824
TU192043 other upstream 666153 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 781451 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 866375 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 973519 2785925 ~ 2786348 (+) True G129993
XR_006247126.1 other upstream 1429591 2330141 ~ 2330276 (+) True LOC122324256
TU192476 other downstream 483783 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 633600 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 698930 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 698930 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 722715 4483700 ~ 4490450 (+) False pabpc1b

Expression Profile