RNA id: TU192360


Basic Information

Item Value
RNA id TU192360
length 1974
lncRNA type sense_over
GC content 0.42
exon number 5
gene id G130313
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 3898061 ~ 4076098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctcaaaacaagaaacaattaaaaattcatattgtgTGGCAATTTTCCCATCTCCACAAACTGTGACCTCGCTCCTCATTCAACCAGTGTCTGCTGCATTGAACAACACAACGAGAATGAACACGGTCCAGTCCACTTCAGTACAGCACCATCCAACGGGATCcgtttttagaacattttctttagaacgagaagaaaatcaaatatacttGCAACCTTTTTTCAAGTCaaacttgaataaatataaattttcttAACTTTTTCCCtcttgtattcatttatttttttggatttcttttgcctgttttgattttttcttttccttttttttcttttcaagaaaaGATGAGTGCCAAGAGGTGGAATGTTGCGTTGAATGTCTGAACCGTTGGCCACAAAACCTGGACCCCGACCTGAATCCGTGGACGACGCTAGATCTGGGGGACGGCCGAGCCTCTGGTCCACATGCACTGTACACAAAACTGCGAAAAATTCCCAGATGTCTCTATCAAAACATGCTGTATTACTCAGACGGTGTGCTCAATCCATGTTGCAGACCCTTTTCGACATGCTTGCTTTGAATGAATGAGCCATTCTATTGTAACAGAACAGCGGAGTCTCCACAGACCCAAAATCTACAGCTCCGTCTCCACATGAACACAGAATTATGGCTGCATTTGAagagagaaatgtacaattGTCATGTTCGGGTTTTtttttttttatatcgaaatcaatattgtacatttattgtttttcttgacAATCCCttgcttttttctgttaataacaTGAGATACAAAGTCTCATCAGGCCACACCTGTAACCGAgatctgtaaaaatacagaagaatATTCTAAAGGATGACAATCACATCGTTATCGTTTTGCATTCAGTCCCTTTGAAAATCATGCACTAGagaatttcatattaaaaataatacaaattgttGAAAATGGCTGATCTGGTCATCCTTAAATAagtttcttcctcttttttttctttttttttttttttttgcaagtctCGAGGAAAATAAACTtccgtttttttaaaacaactctgcatccatgcaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaataatctcatAAATTTCATACAGTACATCAACGAAGAGAACATCATACCGGAGCACAAAAAAAGgtccattatttattaataattaatttctttttTTCCTCGTCACCGAACTTTGAAGATCAATCCATTGGAGGTCTGGCTTGATGTAGGGTCGTTCCCGTGAGGTTACCCTTTCCCTTTTCGGTCCCATCTTAGCCAAGCGCTTCTCCCTTCTCGGATCTTCTTTAGACAGCTTGGCTTACAGTAATGGCTACAATGCTTCAAGTTCTACTGTAGGTAAGAAACACTGACATCTCTTTGAATACAACAGAGAGGAAGCAGCCAGAGTAAAACGCCGCCTTCCTTTTCCGGTGGAAATGAGCGCTCTTAACGTCCTGTGGTTAAGAGTCAGGCTCGGCGGAATCCTGGCTGCATCTCTTCAGCTGAACGGAGAGACCCTCCGTGGCGTTCTCGCCCTGCGTGCGACAGCagcatacattttcttttcttttcgtttttttttttctttttttggcagAAGGACGCAGGCCTTTTCTTAGCCTCTTGTCGCACGGGCTCAGAGGACACAACATCAAGCATGCAGTGTAACCAGGACGTGACCCGTCTCTGTCTGTAGCTGGTGCTACTCACGCCGCTCTCTACCGCTCACCTCCTCGTGCCGCTACGACCGAACGTTAGAACTGTCCAGGCCTGAATCTGGAGGTTTACTACTTAAAGGTGCCAAGGTCGGGTCCACTAATGAGGTGGGAGGGAAGAGCTTGTACCAGCCGATCACCATGTTGGTCAGCTCTAAATCGTCCAGCAGGATCTGGGCCGCTCCCATGAAGGATTTGTGGTCCATGCGTCCGTAGTCTCCCCAAACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192190 lncRNA upstream 321871 3572274 ~ 3576190 (+) False sh3bgrl3
TU192143 lncRNA upstream 356667 3465239 ~ 3541394 (+) True G130150
TU192139 lncRNA upstream 357293 3537502 ~ 3540768 (+) True G130148
TU192166 lncRNA upstream 379663 3516460 ~ 3518398 (+) True G130168
TU192129 lncRNA upstream 399507 3496699 ~ 3498554 (+) True G130138
TU192394 lncRNA downstream 74579 4150677 ~ 4160027 (+) True G130336
TU192396 lncRNA downstream 100170 4176268 ~ 4199257 (+) True G130338
TU192486 lncRNA downstream 189726 4265824 ~ 4266108 (+) True G130381
TU192488 lncRNA downstream 191567 4267665 ~ 4268124 (+) True G130383
TU192529 lncRNA downstream 304626 4380724 ~ 4382647 (+) True G130421
XM_043217926.1 mRNA upstream 6096 3863228 ~ 3891965 (+) True LOC122323815
XM_043217925.1 mRNA upstream 35451 3859464 ~ 3862610 (+) True LOC122323814
XM_043217736.1 mRNA upstream 46052 3840241 ~ 3852009 (+) True lrp12
XM_043217737.1 mRNA upstream 46052 3843677 ~ 3852009 (+) False lrp12
XM_043217650.1 mRNA upstream 218688 3623775 ~ 3679373 (+) False epb41a
XM_043218200.1 mRNA downstream 125135 4201233 ~ 4210130 (+) True LOC122324024
XM_043218108.1 mRNA downstream 221150 4297248 ~ 4302229 (+) True fam210aa
XM_043217299.1 mRNA downstream 315601 4391699 ~ 4393255 (+) True LOC122323460
XM_043217672.1 mRNA downstream 318487 4394585 ~ 4406579 (+) False ptpn2b
XM_043217671.1 mRNA downstream 318487 4394585 ~ 4406579 (+) False ptpn2b
TU192216 other upstream 137076 3759867 ~ 3760985 (+) True G130208
TU192043 other upstream 804347 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 919645 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 1004569 2889689 ~ 2893492 (+) False serinc2
TU191918 other upstream 1111713 2785925 ~ 2786348 (+) True G129993
TU192476 other downstream 168670 4244768 ~ 4259085 (+) True G130372
XR_006247039.1 other downstream 318487 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 383817 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 383817 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 407602 4483700 ~ 4490450 (+) False pabpc1b

Expression Profile