RNA id: TU192529


Basic Information

Item Value
RNA id TU192529
length 1085
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G130421
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4380724 ~ 4382647 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcacACTCGCAAAAGTTGCGTTCATTTGAAGAACTGTTTGTACGCGCTCCTTTTGAATTCCCGTCTGAAGTGGCCCTTCAAGGGGAACGCGCTCTTAATATCTCCAGTATATAACGATCAGGGTCCAGCTTTTGATTTAGGGTCCACTACTTATGCACCCAACTCCTGAATTGTGAAACTTTTTGTCTATTAACAGAGATACCGTGTCAGAGGTTTCATCATTGCCCGCTAAGATGCACAACATCCAGATAGTTTCTTAGCACGATCTGGGTTCCTGTAACAAAAGACATCTGCTAATTCAGCGAGTGACCAATTAAAACGTAGTATGTTAGTAATTCCAAGGGCATGTTTTGAGCAGATCTGAATGATAGTGTCTCCCTCTGCTGTCCACACTGCATGCTAGCGGCTTCAAACCCACGGCACGGTTCACCCTTTACCAGATAAACGAGGAGTTCaaaaaatgtcatcttttgcgtttcacagaagaaaaaatgttaacaatataGTTcgattttgggtgaactgctcctttaaacGCTGCTACATACGACATGCTCGGTGCGAATGCAGACTAAACTCGTGGAAATTGACCCGactgtgttaaaataaatacgtGAGTAGTACCGCATGACGTCAGGACGATTAATAAGTAGGTCAGTATCGATGGGAATCGGGTTTAGTGTATAACTGGTTTAGAAGCACACAGTAAAGGCTCTTTGTCAGGCAGGTGGCGCTGAACACGCCGCACGGCTCCTTCGGTGGATTAGTAGCTAGACGAGAGTTCAGGTGAGGGTCAGTGAGGTCTTGGTCCAATCCCGAGCatgcagcaaacagccaatcagcacgGCATGCCGTTAGCCTGGCATCAGCTgagctttttttCCTGCCAGCAGAAGCGGCCCCGGCGACCATCTGAGCGGCTCCAGGGACGCCGGCCGCGCTCAGAGCCGCAGCGTGTCCAGAAGAGCCGTTCACCGGGCTGCCGTCTCCTCTCAGGATCCCCGTGCACTTCCAGTTATCCATGTAGTTAGCTGCACGCCAGATCAAACAGCATTCGTTTATATGAGGCACGTAAAGCCgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192488 lncRNA upstream 112600 4267665 ~ 4268124 (+) True G130383
TU192486 lncRNA upstream 114616 4265824 ~ 4266108 (+) True G130381
TU192396 lncRNA upstream 181467 4176268 ~ 4199257 (+) True G130338
TU192394 lncRNA upstream 220697 4150677 ~ 4160027 (+) True G130336
TU192369 lncRNA upstream 416006 3945395 ~ 3964718 (+) True G130318
TU192541 lncRNA downstream 24976 4407623 ~ 4408091 (+) True G130426
TU192561 lncRNA downstream 77268 4459915 ~ 4464590 (+) False znf706
TU192572 lncRNA downstream 115302 4497949 ~ 4498186 (+) True G130449
TU192749 lncRNA downstream 353414 4736061 ~ 4737582 (+) False LOC122323749
TU192750 lncRNA downstream 353414 4736061 ~ 4737582 (+) True LOC122323749
XM_043218108.1 mRNA upstream 78495 4297248 ~ 4302229 (+) True fam210aa
XM_043218200.1 mRNA upstream 170594 4201233 ~ 4210130 (+) True LOC122324024
XM_043217928.1 mRNA upstream 327567 4049910 ~ 4053157 (+) True LOC122323824
XM_043217926.1 mRNA upstream 488759 3863228 ~ 3891965 (+) True LOC122323815
XM_043217925.1 mRNA upstream 518114 3859464 ~ 3862610 (+) True LOC122323814
XM_043217299.1 mRNA downstream 9052 4391699 ~ 4393255 (+) True LOC122323460
XM_043217672.1 mRNA downstream 11938 4394585 ~ 4406579 (+) False ptpn2b
XM_043217671.1 mRNA downstream 11938 4394585 ~ 4406579 (+) False ptpn2b
XM_043217822.1 mRNA downstream 34869 4417516 ~ 4430925 (+) False ncaldb
XM_043217823.1 mRNA downstream 35818 4418465 ~ 4430925 (+) True ncaldb
TU192476 other upstream 121639 4244768 ~ 4259085 (+) True G130372
TU192216 other upstream 619739 3759867 ~ 3760985 (+) True G130208
TU192043 other upstream 1287010 3093067 ~ 3093714 (+) True G130077
TU191970 other upstream 1402308 2970687 ~ 2978416 (+) False phactr4a
TU191942 other upstream 1487232 2889689 ~ 2893492 (+) False serinc2
XR_006247039.1 other downstream 11938 4394585 ~ 4406579 (+) True ptpn2b
TU192559 other downstream 77268 4459915 ~ 4464904 (+) True znf706
TU192560 other downstream 77268 4459915 ~ 4464590 (+) False znf706
XR_006247113.1 other downstream 101053 4483700 ~ 4490450 (+) False pabpc1b
XR_006247121.1 other downstream 105334 4487981 ~ 4488115 (+) True LOC122324250

Expression Profile