RNA id: TU192614


Basic Information

Item Value
RNA id TU192614
length 320
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G130465
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4298509 ~ 4300326 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGAAATGGCACCAAATTGACTCCTCTATAAACTTCATGGCAGCGTAGTAGAAGGTGCCGAACCACAGAGTAGAGGTCAGCAGGTGCACGGGGATCATGACTTTGCCGTACTGCTTAAAGGTTTTCTTGAATCTCTGAATGAGGCCGATAGACCTGTCCTGCAGAGGGTCCGGATCCTCCTGTCCCGGAGGCTCTCTGCCGCTGATCCCCCGCGGACCGCAGCGCAGGCCCGTCCAGCAGCCGTGGGCCGCGGGAGCCAGCATCTGCACGGGACGGCCCTGCAGCAGGACCCGAGCGCACGCCAACCGCTGCATCCCGT

Function

GO:

id name namespace
GO:0051090 regulation of DNA-binding transcription factor activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192611 lncRNA downstream 10639 4287488 ~ 4287870 (-) True G130463
TU192607 lncRNA downstream 31085 4267179 ~ 4267424 (-) True G130459
TU192473 lncRNA downstream 66094 4228999 ~ 4232415 (-) True LOC122323452
XR_006247013.1 lncRNA downstream 66129 4230499 ~ 4232380 (-) False LOC122323452
XR_006247012.1 lncRNA downstream 66129 4230499 ~ 4232380 (-) False LOC122323452
XR_006247040.1 lncRNA upstream 103691 4404017 ~ 4405900 (-) True LOC122323668
TU192654 lncRNA upstream 107868 4408194 ~ 4408394 (-) True G130494
TU192638 lncRNA upstream 169433 4469759 ~ 4484396 (-) True G130482
TU192630 lncRNA upstream 189934 4490260 ~ 4491487 (-) True G130476
TU192692 lncRNA upstream 239943 4540269 ~ 4541591 (-) False polr2k
XM_043218103.1 mRNA downstream 1752 4285292 ~ 4296757 (-) True rnmt
XM_043218104.1 mRNA downstream 31371 4244693 ~ 4267138 (-) True mc5ra
XM_043217342.1 mRNA downstream 80796 4211439 ~ 4217713 (-) True cthrc1a
XM_043216987.1 mRNA downstream 147443 4074040 ~ 4151066 (-) False rims2b
XM_043218106.1 mRNA upstream 3089 4303415 ~ 4376360 (-) False ldlrad4a
XM_043218105.1 mRNA upstream 3089 4303415 ~ 4376360 (-) True ldlrad4a
XM_043218107.1 mRNA upstream 3089 4303415 ~ 4325888 (-) False ldlrad4a
XM_043218276.1 mRNA upstream 78188 4378514 ~ 4387615 (-) False seh1l
XM_043218278.1 mRNA upstream 80365 4380691 ~ 4387613 (-) True seh1l
TU192049 other downstream 1148720 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1386906 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 1465553 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 1546939 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 1979136 2319236 ~ 2319373 (-) True LOC122324259
TU192945 other upstream 507771 4808097 ~ 4941832 (-) True G130696
TU193036 other upstream 786918 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 786918 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 800495 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 841179 5141505 ~ 5158002 (-) True G130744

Expression Profile