RNA id: TU192890


Basic Information

Item Value
RNA id TU192890
length 225
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G130665
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5356870 ~ 5357094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttaattgTGTTCcagagacaaacaaagcttttacgggtttggaacgacatgggggtaagtgagtcatcacagcattttcattttggtccGGAGTAAACCTTTAAGACTTTTGTCTAATAAATATCTCTACTGTTTCTCTACATTCACGTAAATTCGTTGTCATTTCCACAACACCCTGTCATTTCCATcaccacacacatttttaaaaaatatttaaaaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192873 lncRNA upstream 129257 5226723 ~ 5227613 (+) False LOC122324077
TU192840 lncRNA upstream 136789 5048394 ~ 5220081 (+) False G130622
TU192838 lncRNA upstream 136789 5100791 ~ 5220081 (+) True G130622
XR_006247095.1 lncRNA upstream 317094 5031025 ~ 5039776 (+) True LOC122324049
TU192809 lncRNA upstream 369153 4850884 ~ 4987717 (+) False G130612
TU192908 lncRNA downstream 25722 5382816 ~ 5386117 (+) True G130676
TU192909 lncRNA downstream 28042 5385136 ~ 5385548 (+) True G130677
TU192888 lncRNA downstream 47359 5404453 ~ 5405566 (+) True G130664
TU193148 lncRNA downstream 146172 5503266 ~ 5505414 (+) True G130813
TU193185 lncRNA downstream 191413 5548507 ~ 5548799 (+) True G130833
XM_043218387.1 mRNA upstream 3610 5344211 ~ 5353260 (+) True si:dkeyp-92c9.2
XM_043217006.1 mRNA upstream 14156 5330425 ~ 5342714 (+) True thbs3b
XM_043218374.1 mRNA upstream 27870 5316918 ~ 5329000 (+) False mtx1b
XM_043218376.1 mRNA upstream 27870 5316946 ~ 5329000 (+) True mtx1b
XM_043217236.1 mRNA upstream 65072 5288167 ~ 5291798 (+) True polr3gla
XM_043217023.1 mRNA downstream 49955 5407049 ~ 5424788 (+) False LOC122323295
XM_043217025.1 mRNA downstream 49955 5407049 ~ 5421507 (+) False LOC122323295
XM_043217027.1 mRNA downstream 49955 5407049 ~ 5420572 (+) False LOC122323295
XM_043217024.1 mRNA downstream 49959 5407053 ~ 5424788 (+) True LOC122323295
XM_043218181.1 mRNA downstream 114688 5471782 ~ 5483668 (+) True si:ch211-195b13.1
TU192862 other upstream 42692 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 42692 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 177193 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 193471 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 373626 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 226411 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 388707 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 428036 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 1105989 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 1162826 6519920 ~ 6526080 (+) True G131042

Expression Profile