RNA id: TU192909


Basic Information

Item Value
RNA id TU192909
length 364
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G130677
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5385136 ~ 5385548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggagaggagaggagaggagaggagagaagaggacaggaggagaggaggaggatgagaggaggaggaggaggagaggacagAAGAGCTGCCCATGACTCCACACTAGAGCAGGATTTAGCAGGTGTTCCTCTACTGTTAACTGCTTTATCAAATACAGACAGTCCCCATTAGAGAGATAACATTTTTCAGCACATCTACATATGAGATTACCTGAGCTATTTTGAGAGACCCCTATTTCATCTGTTCACAGTAAAGAGTATTAAAGGGGTAGTTGTGTAGATTAATCCCAGATTAAATTCATGCTTAATTCTACAGAAAACATATGTTCTTGCAGATGCACCGTACCACAATTGCCAAATCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192890 lncRNA upstream 28042 5356870 ~ 5357094 (+) True G130665
TU192873 lncRNA upstream 157523 5226723 ~ 5227613 (+) False LOC122324077
TU192840 lncRNA upstream 165055 5048394 ~ 5220081 (+) False G130622
TU192838 lncRNA upstream 165055 5100791 ~ 5220081 (+) True G130622
XR_006247095.1 lncRNA upstream 345360 5031025 ~ 5039776 (+) True LOC122324049
TU192888 lncRNA downstream 18905 5404453 ~ 5405566 (+) True G130664
TU193148 lncRNA downstream 117718 5503266 ~ 5505414 (+) True G130813
TU193185 lncRNA downstream 162959 5548507 ~ 5548799 (+) True G130833
TU193190 lncRNA downstream 179832 5565380 ~ 5587515 (+) True G130835
TU193218 lncRNA downstream 225440 5610988 ~ 5612338 (+) True LOC122324017
XM_043218387.1 mRNA upstream 31876 5344211 ~ 5353260 (+) True si:dkeyp-92c9.2
XM_043217006.1 mRNA upstream 42422 5330425 ~ 5342714 (+) True thbs3b
XM_043218374.1 mRNA upstream 56136 5316918 ~ 5329000 (+) False mtx1b
XM_043218376.1 mRNA upstream 56136 5316946 ~ 5329000 (+) True mtx1b
XM_043217236.1 mRNA upstream 93338 5288167 ~ 5291798 (+) True polr3gla
XM_043217023.1 mRNA downstream 21501 5407049 ~ 5424788 (+) False LOC122323295
XM_043217025.1 mRNA downstream 21501 5407049 ~ 5421507 (+) False LOC122323295
XM_043217027.1 mRNA downstream 21501 5407049 ~ 5420572 (+) False LOC122323295
XM_043217024.1 mRNA downstream 21505 5407053 ~ 5424788 (+) True LOC122323295
XM_043218181.1 mRNA downstream 86234 5471782 ~ 5483668 (+) True si:ch211-195b13.1
TU192862 other upstream 70958 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 70958 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 205459 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 221737 5162586 ~ 5163399 (+) True G130637
TU192810 other upstream 401892 4977885 ~ 4983244 (+) True G130613
XR_006247105.1 other downstream 197957 5583505 ~ 5585655 (+) False LOC122324139
XR_006246984.1 other downstream 360253 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 399582 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 1077535 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 1134372 6519920 ~ 6526080 (+) True G131042

Expression Profile