RNA id: TU192968


Basic Information

Item Value
RNA id TU192968
length 4224
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G130710
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 4873734 ~ 5013690 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCTAGTgtatcagtttttattttatttgcacgTCCATTGTGTTAACAACTTCAACATACAGTACAGGTCAGCATTAGTGTAACATACTGTATTTAGCATAAACTCACAGCAGTATGCAGATAACTTGCCCTCAAAAAGCATTACAGTTCACACTTTATGTTAGATGTCCCTGAAGATCGTGTAGTGAAATGCGCGGTGTTAAGCCGGGTATGTAAAGTACATGTTATTCGCAGTACTTACGTTATACAAAGACAACTTGCTTGTACTTACAAATATTGAAAAGGCCAGGTAACAACACGACTCACACTACAGTGGTGGTCAACTAACACCGTTCATCATCTAGGTACAGTGGTTTAAGGGACACCTAAAATAAAGCCCAATCACTAACTTCATTCCACCTTAACCATATCCATATggactaatatatttattacagtaatttttCTTCTCAGCTCATTTTCGTCTTTGTTCCGCTTTCGATGTTTCTGTACAACACACAACAGCAAAAAACCGAGGGATCGTTAGGGACCagtggcagagagagagaaaaacaaaaggggGGCAGATAGCACTCCAAAAGAGGAGGTTTACACAGAAAGAAACCATTTCCATTCCAGGTAAAACAGTTAGATACAAGAAGAGCAGAAAGTGCTGCTGCCCACCAGTGCATTGGAACAAACACTCATTTACAATTGGTTATATTCATCTTTTATGTCTATACTTATTGATATAAAACAAGCTTTTATGCCCGAAAGATCAAAAAAGTTCCAAGTAACACAAGGAGCCGAGGgttaaagtaaagaaaaacacGCATGTATCATTTCACGTAGGTTGCATTGTGGTTTTTGAGTTGCTGTTTTTTACAAAAGTGGGTTTTGCTGTCATATAAACcactaaaaactgtaatatatacaccagttttaaagcagaaatttGAATAGTCGTTGCATGCAGGGTTAAAAACATTATAGAGGGCGGAAGAGTTCACTTTTCCGTCGAAAATGTAGAGAGTGAAACTGCCAGACGATGGgtttcttaattttattcaaaatgtaactGGAATGTGATTCGGTTTTTTCCAAACAAACAACGGTTAATATCATTATGTGGCCCGAATGGAATAGACCCCATATTTTTCTCGCCCCCAAGCCGtcctatgtgtgtgtgactttctttttttagacgaacacagtcaagagttttttttaaaatgcatcctGGCTCCTCCAAGCCTGACggtgctggtggatagtggtcattattttgaagctcagtAAACCGGATATAACCGCAAGCGCTGCGACGTAAAACACCTACACCCCTccgggggttatcacatgtcctttGAAGCAGATCGActggtttttgtaacaaaaaaattctcgtttttttaaattataacgtaaataactgaGTGCAAATTTCCGTCTGACGTATGATGTGTGACGTAAGTTGCGTCATCCGTTGAGTCACAGATCAGCCATCAGCCGCTGAAAATAAACATgagtcagttatttacgttataatttttgttacaaaaaccttcatctgcttcagaggacataaGATAACCCCccgaaggcgtataggttagttacTTAGCAGTGCTTgcggatatatccgatttactgagcttcaaaataactctgactgtgttcgcCAGTCACATGCACataggatggctttggggtgagtaaaatacggggcaatttaaattttggggtgaactgttcctttaatgacTCAAAAGGAGCTTGACTGCAGATATCACAAAGAGAACACTGGGGCTTAATTTACTGCTATATTAATTTCACATGGTAAATATGAAATATCTCTAATGAGCCGGTcgatatcttttttttctcctctcacCCTCCCACATTCTGCCTTATTAACTAAATACGCGCTCATTCGCTCTGGGAATAGAGCATGTAATCTGCCTCGGGGGCTGTGGGCACCGAATTACATCATTGGGAACACATCCACACGCACATTGCATGCCTTCAAACATGGACTCAGAGGCCTGTCTGAAGCTGCACTGCGAGCTGCTTCATCATGGTCCCCAACACGCCACAAGACATCGGTCCGTCTACTTTGGTTAGTTTTCCACAGCTGCCGCTGCTGACTAACGGTTACTTGGCTCATGCCAAAATCCTATTTTTGATATGGTCAGTTATTAGTCCTATCATAGTTATTAGGGTtttgatatacatatatatatatagtttttcttttgaacacaaatcataaaaataaatacagtgctCTACGAAAGTGCAAAAATTGGTCTGAATCTGCATATATCTCAGCTATAATTCATAGAATAGAGAATAGACAGGCTTAAAAAGCCAAACTTATTGAAGTAATACGCTGGGGTGGCTAATTTTTGTTCTGTTATTTCCATGacacttttgatatttttggcaATGTTCAATTAAACTGTGAAAAAACCGACTAAAGAGTACCAGTGTTACGGCCTATGATACATTATGTACATCGTGACCAAAGGTGTTAAGAATTAGTTGCACGGCCTAAAGAATTAAACGTGGCCTTAAAAAACACGTTCGATGTCAGTAGAAACTGTGACGTTAGGTACAGTACATGTGAAATGACAATACGCTGATATGCTAATATCTCTGTCACATTTggcttttactgtttttttaaatcggtGTTTCCCTCCAGCGTTTCTAACCGAACCATCCCTGATCTCTATGCTATGGTATAGCACAGCAACCGGGTTAAAACTTCCTTTGCAGTACAATGGTAATGTGCATAGATATGCctaaagaaagaacaaaaaaaatgaaatcaatgaaTGGTAGATATGTTGAGATACGTCGACAACACAAAGGTAATAGAAGTGCTTTGTCCAAGTCATCAAGACGGAGAAATCAACAATAATGTATAAGTACagctacaaataaataaagtagcTACAGCATAAAACAGGGAAAGTGTAGACTGGCTTTACTGAATTGAACATGAATCAAATTTTCAATCCTGAGCTGACGGTCTCTGATTTTCATTTGGTGGTTGGCTGAAAACTGCCTTGACATCAGGTTTAGTTTGGAGTTTTATGTTCTCCAGCGAATCTTCATCTTTgttaaaagattaaaagcattacttttttaGCTGGATATGAATAACAGCCGTATTTCAACCTTGTCTTCTGTGGTAAATATTAGCATGTTAGCAAAAATGCTCATGATGGTGTCCTGTTATCAAACACTCGCCCGTTATTTCCTTAAAAAGTTAACTTTAAAACTCCTTTTTCAAACAATCCTCCTTCATCCTCGAATTAAAAGTGTCTCACTAGCTCTAGCATGCGGCTAATTGAAAGTAGTGTATGTATATGGTGAATATGCCAGTATACTGGTAAAAGGTTCTGAGGATACTGTGGTTTAACTCTCATACAGGTATACTTCTcttataattgatttattattatctaaTCAGAGCCAAAAACCACACTGACggtgttatttttgctttttttcctctgtatttttttgctatGACGTATGAGTCTTTTTTGCTACGAGTTCATTAGAGAACTTTCTTTTTCTGGTCTTGAGTCCTGACACACGTACTTATCCTCTCGTACACCTATCTGTACAGGGAAAAGGAGAAATTGTTAAATGGGCTTCTTTCTATAGCAGGGCTGACAGGAAGGAAGTGGTATAATACATTTCGCTTTTTCCCTCGCATTAGGCAGACACTAGTACTCTATAAGGTTATGCCACTTGGCGATCTGCCGCCTTGGGTTGTCACAGACTTCCCTCCAGTGAGTCACCCCTGATGGGATAGGGCTCTGACCACCCAGAACCAGGCGACCCACGACCTCATTCTTCGTGGTGCGGTCGAAATCAATGACCAGAAACTCCACAGAGATGTCCGGCATTAGCTCAGCGGGAACATCATAGATAAACGACTCATTGAAAACGGGATTGAGTGTGCATTTCTTCACATGCGTCTTCTTCTTGGCTATGCGCTTGCGGCCGTAGAAGACGTTCACTTTAACATAAGGGTCTGTGGGTGGAGAAGGGAAATAAAGACCATTTTTGGCATCATAAATGGGATCGTTtgaatatctatatatctgtatgtGTGGTGTGTACTTACTGCCTGACAGGCCAGTGATGTCCATGGTTGGCAGGTGTTTGGCCTTAAGGACTACCACATTAAGCCTGTGAGTAACAGGCTGGTAGGATAGAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192926 lncRNA downstream 129179 4738805 ~ 4744555 (-) True G130690
TU192692 lncRNA downstream 332143 4540269 ~ 4541591 (-) False polr2k
TU192630 lncRNA downstream 382247 4490260 ~ 4491487 (-) True G130476
TU192638 lncRNA downstream 389338 4469759 ~ 4484396 (-) True G130482
TU192654 lncRNA downstream 465340 4408194 ~ 4408394 (-) True G130494
TU193040 lncRNA upstream 80722 5094412 ~ 5219970 (-) False LOC122323502
TU193038 lncRNA upstream 87131 5100821 ~ 5219970 (-) False LOC122323502
XR_006246985.1 lncRNA upstream 129575 5143265 ~ 5158004 (-) True LOC122323269
TU193042 lncRNA upstream 162780 5176470 ~ 5222159 (-) True G130738
TU193055 lncRNA upstream 176746 5190436 ~ 5192653 (-) True G130750
XM_043217749.1 mRNA downstream 45819 4821737 ~ 4827915 (-) True LOC122323699
XM_043217748.1 mRNA downstream 45820 4821737 ~ 4827914 (-) False LOC122323699
XM_043217137.1 mRNA downstream 53707 4809114 ~ 4820027 (-) False LOC122323359
XM_043217138.1 mRNA downstream 53843 4809114 ~ 4819891 (-) True LOC122323359
XM_043217841.1 mRNA downstream 138074 4707322 ~ 4735660 (-) True LOC122323748
XM_043217362.1 mRNA upstream 38636 5052326 ~ 5060357 (-) False LOC122323496
XM_043217361.1 mRNA upstream 42370 5056060 ~ 5060357 (-) True LOC122323496
XM_043217363.1 mRNA upstream 49475 5063165 ~ 5065170 (-) True LOC122323497
XM_043217364.1 mRNA upstream 63024 5076714 ~ 5078874 (-) True LOC122323498
XM_043217365.1 mRNA upstream 70203 5083893 ~ 5089261 (-) True LOC122323501
TU192049 other downstream 1723945 3149154 ~ 3149789 (-) True G130083
TU191990 other downstream 1962131 2908489 ~ 2911603 (-) True G130041
TU191925 other downstream 2040778 2825344 ~ 2832956 (-) True G130000
TU191907 other downstream 2122164 2740004 ~ 2751570 (-) True LOC122323398
XR_006247129.1 other downstream 2554361 2319236 ~ 2319373 (-) True LOC122324259
TU193036 other upstream 73554 5087244 ~ 5104353 (-) False LOC122323502
TU193037 other upstream 73554 5087244 ~ 5222883 (-) True LOC122323502
TU193035 other upstream 87131 5100821 ~ 5104353 (-) False LOC122323502
TU193048 other upstream 127815 5141505 ~ 5158002 (-) True G130744
TU193049 other upstream 127815 5141505 ~ 5260164 (-) False G130744

Expression Profile