RNA id: TU193089


Basic Information

Item Value
RNA id TU193089
length 2140
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G130768
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5271840 ~ 5274921 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatataaaataaacagccaaaGAAATAACTTCAAACCAAGAGAACATCACCATTATGGAAATTATTCCGCATTTTCCATTGTAGATCTAATATACTTTGTGCTTAAAAACGTTTGGCTTTACTGTCCAAACACCTTGAAAGGGcactgattttattcattttctccTTCATTGGAAAAAAGTCTGTACCAAGTGCAAAGGGTCTGTATTCTTAAGGTTATTAATCTActgtgttataaatatattacaagaCAAGATGTACATTACACAGCAGTAACAAATTAATAGGAGAGATGTGAAACTATCATTGAAGTTATCAactcatatctatctatctatctatctcaacAACTAAATATTATGCTAAACCAATTACAGTTATACATTCCAAAGCAAACTGCTTAAATTGCTTTCCAATTTAAAGCAATGTAGTAAAGTACAAGTTGCATATGCACAGTCCCCCAAGTAACAACACTACCTCTTCTTTTTCcctttatatttcattcaaaaactttatattcattCCAACATACTTATCCaatcattaaaggaatagttcgcccaaaaatgaaaattaccccatattttcttccccgaagccatcctaggtgtatatgactttcttctttcagagttttttaaaaacgtgtcctggcttttccaagctgggtaatgctggtggatagtgaccattattctgaagctccataaatcatatatatatatatatatatatatatccatcgtgaaactaacctatacgcctccGGGAGGTTAacacatgtcttctgaagcagattaATGGGGTttgttaccaaaaaaaacacatttttaaattataactcAAATCACTGTCTTCTGTTAACAgctgtacacttttttttttaatatcgcTCTATCCTTGTCTATTCTCTTCTGAGCTTacttgtgtttgtctgaaagaagaaagccacgTACACCTAGCATGGCTTCAGGGTGAGCGAAGTATGGGGTGATTTCCCTTTCTGGGCGAACTCCTTTAAGCTCCAGCACAGGCTAAACATTAAACAGAAGGTCTAATCAAATTCTACTGTAAAAAAGCTTCCAACTTTGACTGATTTGACTTGATATGAAAGAGCAGACGAACGGGTCTTTACTGAGGAGTCACATAAATTCTTCAACCGTGTGAAGTTTACGAACTTTACGACTTTTTGACAGGCGCACTTTATGAGCGGAACTTTTGAAGATGCTATGTTTTGCACTTCGGTACAGTCCTTTGAAAAGGCATCAAGGAAACTGCTTCAAGAAAAAACTGTAACAAGAAGGCTGATGTGGCCAGCCGATCAGTTTTATGCTTCCTACTGCCCCCAAAACCCACCCACGTGCATTCATCGTCAATGTGCGCCCGTATCTACAGGACTATGCGCGGGCCTATCTTCCCACAATGCATCAGACGAGCTCACCACAGCGTAGATCTCCAGCCTCCTGCAGTGCTCACAGTGGTACGTGTCCTGACGGTACGGCAGGTGACGGGACAGCAGGCCGAGGACCGCCGTGGAAAACGCTGCACTGACCAGAACAGAGACGGGAACCGTCCGGCGTGGATTAAAATGGATCCAGACACAAGCAACTGATGACGAGAGGACTCTTTTAGTGCCAAACAGATTAAAGACACTGCTTTTAAGGTCCACGGCACACCGGGCTCACCTGAACAACAATCACCACCACCACAATGACATCAGGAGAGAAGTGAACCTCTTCATAGAGCTGAAGGATGGTGATGCTCAGGCACAAGCACAAGACGGCAATGATGATCTGAATGGACTGAAACAACAAAAGGAATCATTTTCTGACGCTATGCGTAGCTTCAAAGACTTGCGTGACGACTGCATTATTACAAAGCCAGAGAAGTCTCACCCCCAGCGCTTTGGGCTCCACGTTCTGAAAGGTCTTGACCTGCTTCGGGGTCAGGTTTCCTGCAGGACGCGGGGGGCCCTGACTCTCTATGCCCATGCTGATGTCTGTCAGTTTGACGCCTGGCTAGGCTAAAATCACAGAATCGGTTGGAGACGAGAAGTGTAAGAAAAGCTGGTTGTGAGGAAGAAACCGCACCGaacagagaaaaagaacaaGGACAGAGCGGGTCAGAATGAAAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246983.1 lncRNA downstream 31759 5237309 ~ 5240081 (-) False LOC122323253
XR_006246982.1 lncRNA downstream 31759 5237309 ~ 5240081 (-) True LOC122323253
TU193039 lncRNA downstream 48957 5220812 ~ 5222883 (-) False LOC122323502
TU193042 lncRNA downstream 49681 5176470 ~ 5222159 (-) True G130738
TU193038 lncRNA downstream 51870 5100821 ~ 5219970 (-) False LOC122323502
TU193085 lncRNA upstream 70674 5345595 ~ 5353262 (-) True G130764
TU193116 lncRNA upstream 129595 5404516 ~ 5405636 (-) True LOC122324254
TU193130 lncRNA upstream 158641 5433562 ~ 5433929 (-) True G130801
TU193134 lncRNA upstream 165505 5440426 ~ 5440865 (-) True G130804
TU193178 lncRNA upstream 246018 5520939 ~ 5522620 (-) False G130827
XM_043217352.1 mRNA downstream 35308 5233781 ~ 5236532 (-) True LOC122323489
XM_043217353.1 mRNA downstream 35311 5233783 ~ 5236529 (-) False LOC122323489
XM_043218450.1 mRNA downstream 102813 5167642 ~ 5169027 (-) True LOC122324190
XM_043217933.1 mRNA downstream 128586 5138430 ~ 5143254 (-) True LOC122323831
XM_043217366.1 mRNA downstream 167498 5100869 ~ 5104342 (-) False LOC122323502
XM_043217341.1 mRNA upstream 6522 5281443 ~ 5287161 (-) True si:dkeyp-92c9.4
XM_043217632.1 mRNA upstream 35827 5310748 ~ 5314165 (-) True txnipa
XM_043217942.1 mRNA upstream 85132 5360053 ~ 5397557 (-) False myo1g
XM_043217943.1 mRNA upstream 92296 5367217 ~ 5397563 (-) False myo1g
XM_043217944.1 mRNA upstream 93643 5368564 ~ 5397563 (-) True myo1g
TU193049 other downstream 11676 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 19651 5245353 ~ 5252189 (-) True G130763
TU193037 other downstream 48957 5087244 ~ 5222883 (-) True LOC122323502
TU193048 other downstream 113838 5141505 ~ 5158002 (-) True G130744
TU193036 other downstream 167487 5087244 ~ 5104353 (-) False LOC122323502
XR_006247125.1 other upstream 129848 5404769 ~ 5404900 (-) True LOC122324255
XR_006247124.1 other upstream 130165 5405086 ~ 5405218 (-) False LOC122324254
TU193406 other upstream 1087426 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 1356268 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 1373517 6648438 ~ 6649389 (-) True polr1h

Expression Profile