RNA id: TU193116


Basic Information

Item Value
RNA id TU193116
length 473
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC122324254
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5404516 ~ 5405636 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACTGCTGCAGAAGCGTCGGGCTCTGCTTCGGCTCTCCTTTAAGGCCGTTCAGCGAGGGCGAGTCTGAGGTGGCTCTGTCTTTTCCTGTGGTGTCTGCTAGATACACGTGAGGTGGTTTGAGACCCTGCTGTCTCCTCCGTGCAGCACGGTTATAGAAACCCCAGACAGCGCTTTAAATCCTTCTGCGCAATGTAAGCGTCTTCTTGGGACGTACTGAAACGTCTAATTTCTGTTCTTTGAAGCCTTCAGACGACGTCCATCCGGCCACCTCAAAGTTGCGCGTCGGCCACGAGTTTGGGAGTAACGCCTGCTTTGCTGTGGTGTTTCTGAGGCAAGAACGGGACAGTGAGATTGACACGTGCACAAAACAATCAGATGTGGTCGGatcaaatgctgttttatatcTCAGGGGTGTTTGAGTAGGTATTTTGAATAATTGTTCtgcttaaagaaaataaataaaaagtgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193085 lncRNA downstream 51254 5345595 ~ 5353262 (-) True G130764
TU193089 lncRNA downstream 129595 5271840 ~ 5274921 (-) True G130768
XR_006246983.1 lncRNA downstream 164435 5237309 ~ 5240081 (-) False LOC122323253
XR_006246982.1 lncRNA downstream 164435 5237309 ~ 5240081 (-) True LOC122323253
TU193039 lncRNA downstream 181633 5220812 ~ 5222883 (-) False LOC122323502
TU193130 lncRNA upstream 27926 5433562 ~ 5433929 (-) True G130801
TU193134 lncRNA upstream 34790 5440426 ~ 5440865 (-) True G130804
TU193178 lncRNA upstream 115303 5520939 ~ 5522620 (-) False G130827
TU193179 lncRNA upstream 115303 5520939 ~ 5522966 (-) True G130827
TU193252 lncRNA upstream 268918 5674554 ~ 5674878 (-) True G130880
XM_043218366.1 mRNA downstream 1385 5398274 ~ 5403131 (-) True si:dkey-154b15.1
XM_043217943.1 mRNA downstream 6953 5367217 ~ 5397563 (-) False myo1g
XM_043217944.1 mRNA downstream 6953 5368564 ~ 5397563 (-) True myo1g
XM_043217942.1 mRNA downstream 6959 5360053 ~ 5397557 (-) False myo1g
XM_043217632.1 mRNA downstream 90351 5310748 ~ 5314165 (-) True txnipa
XM_043217326.1 mRNA upstream 95629 5501265 ~ 5504405 (-) True LOC122323473
XM_043217325.1 mRNA upstream 100416 5506052 ~ 5510656 (-) True LOC122323472
XM_043217324.1 mRNA upstream 109391 5515027 ~ 5519834 (-) True LOC122323471
XM_043217058.1 mRNA upstream 117444 5523080 ~ 5527170 (-) True xkr8.3
XM_043217785.1 mRNA upstream 180901 5586537 ~ 5609859 (-) False ptp4a3a
TU193049 other downstream 144352 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 152327 5245353 ~ 5252189 (-) True G130763
TU193037 other downstream 181633 5087244 ~ 5222883 (-) True LOC122323502
TU193048 other downstream 246514 5141505 ~ 5158002 (-) True G130744
TU193036 other downstream 300163 5087244 ~ 5104353 (-) False LOC122323502
TU193406 other upstream 956711 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 1225553 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 1242802 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 1297687 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 1298235 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile