RNA id: TU193179


Basic Information

Item Value
RNA id TU193179
length 2028
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G130827
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5520939 ~ 5522966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTGTATGACTTTTCTGTTACATCTATATAAAACAGAAGATGATGTTGGTTGGCCTTGCAGAAGAACAACTTCTTTCTACAATGTCTTACTGTTACCggctttctttaaaatattgtttctgtCCTACAGAGGAGATAAGTTCATAGAGGTTGAATTTCTACAACATGAAGGTTAGTGAAAGATGACACTAGATTGAAATTGTTGGGTAAACTATCCTTTAGTTCATTATTTATCCCAttaggatttatttaaaattctaaagTATTGGATTTTCCAATTGTTTGTGTCAGATTAACATTTGTacgttttatgcatttatgcaaaaaGAAGTACATTGTCTGGTCAAGTACGGACAGGTTACAAAAGCAGCTGATGGTGAGGAGAAGTTGGTCTCAGGTTACTGTGCTGTGGGGGTGTTTTCCATACAGTTATTTGTAGCGACCTGCCACGATATCAAACCTGACCGATTTTTCTAAATTGAACAAAGGTAGACTGTCtttagaaaatgtcattttcacttAATCCTGCATGTAAGGCAGTGTTTGTAAGCTCAGAGCTGCTTTGTCTACGAGAAACCTCAAGTCCtcctgctggcagagaatgaatttgcatttttttttttttataattcctTCTGATTTTGCTTAtcgaaaaaaaagaagctactAGAAGAATTtagctgttattattaattgtattggGATGTCTGCCAGACGTTGAGTTGGGGACACAAAAGCATGCATGCGCAGTAACGTTTGTTTCTGAAACCGTCATACATTTTAgcaatttatattcatttttgacTGAAATTATTTATCAAACAAAGGTATGTTGGtatttaacttatttacttGTAAAAGGTTGAATctaaaagcacacaaacagcCTACAATGCTATATTATCGATGGTGTATTGTACATTGTAGTCTAGACTGAACTGAAAGAGACTGAATGAAGTTCATGCCTATGGTAAACACCTTCTAATCttcattacattaaatgacTGGCTTGTCCACACAAAGGTTCGGGGGTTTTTTAGGAGTTCATGTAGTATCGTAACCTTACCTAATATTGAATGTTCCCTAAGTTATGTATTTACTGTTTGAGCCTCTATAGTTTCACTTTGATGCCATTTACATGGAAATGCCTGCCATAACCTGCCTGGACTTATTGGTTAGTTCTTTCAAACTCGTGTCTTGTCATGCTATGTAGATGCAGACTAATAGGTCACAGGTTATATGATGTTGTATCACTGTTCTGTTTTGAGAGGTCTCAACTGAACGTTTGGTTGATGTATTAAACTCAACCAGACTATTCAGTGTCTTGTATTGTGCTTCCCTCCTTGTTTGTGCTCTTTGTTGTTTCCAAGTAACTATTGCCATGTGCTGCCTATTGGGTTACTGGACATCAGATTTTATTTACAAGCTTGATGAGAAGCACAGCtgagaatgtgtttttctaGCAACCGTAGGCACAAGCATctctaaataataattcaaatgatgtCTGGCGTTTCTGGTATTTCCTTTAGATCTTTAGAGCATTCAATATGTGCCTGAGGCAACCAtcactttatattaatgtacGGCTGATAAATTTAAGTATTGAACTTTGGTTGGGTTAGGAGCAATTTTCCCAGGACACACCTTTGCCAGGATTcgtgtattgttttgtttcaagGTACCTCGAAAGCgttttgaaaacataaggaaccgataaaaaattttattccaATTTTATTGCTGAAGTTAAGTTATAAGAGTCGTCAAAGCATATAATAAACACTgggtttgtttatatgtttcGTTACAGCGCATCCTCAGATCTGCACGCGCTGTTTcgagacatttaaatattaacggTCATTTCGTTTTACTGACTGGCTAACAGTCGTTTATTGATCTCTTTATTTGAATGACCAAAAAAGAGAAGCACATCATTAAGTGGTAAGCAATTGAATGTAATCTTAAAGTAAATGTTATTCacttttaatgtatataaaataaaatttacatttttaaacccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193134 lncRNA downstream 80074 5440426 ~ 5440865 (-) True G130804
TU193130 lncRNA downstream 87010 5433562 ~ 5433929 (-) True G130801
TU193116 lncRNA downstream 115303 5404516 ~ 5405636 (-) True LOC122324254
TU193085 lncRNA downstream 167677 5345595 ~ 5353262 (-) True G130764
TU193089 lncRNA downstream 246018 5271840 ~ 5274921 (-) True G130768
TU193252 lncRNA upstream 151588 5674554 ~ 5674878 (-) True G130880
TU193297 lncRNA upstream 222882 5745848 ~ 5876713 (-) True G130914
TU193304 lncRNA upstream 229619 5752585 ~ 5883367 (-) True G130920
XR_006247116.1 lncRNA upstream 315827 5838793 ~ 5847759 (-) True LOC122324223
TU193350 lncRNA upstream 584173 6107139 ~ 6162535 (-) True G130955
XM_043217324.1 mRNA downstream 1105 5515027 ~ 5519834 (-) True LOC122323471
XM_043217325.1 mRNA downstream 10283 5506052 ~ 5510656 (-) True LOC122323472
XM_043217326.1 mRNA downstream 16534 5501265 ~ 5504405 (-) True LOC122323473
XM_043218366.1 mRNA downstream 117808 5398274 ~ 5403131 (-) True si:dkey-154b15.1
XM_043217944.1 mRNA downstream 123376 5368564 ~ 5397563 (-) True myo1g
XM_043217058.1 mRNA upstream 114 5523080 ~ 5527170 (-) True xkr8.3
XM_043217785.1 mRNA upstream 63571 5586537 ~ 5609859 (-) False ptp4a3a
XM_043217784.1 mRNA upstream 63571 5586537 ~ 5597028 (-) True ptp4a3a
XM_043218143.1 mRNA upstream 91302 5614268 ~ 5670371 (-) True rims3
XM_043217403.1 mRNA upstream 152519 5675485 ~ 5705310 (-) True glcci1a
XR_006247124.1 other downstream 115721 5405086 ~ 5405218 (-) False LOC122324254
XR_006247125.1 other downstream 116039 5404769 ~ 5404900 (-) True LOC122324255
TU193049 other downstream 260775 5141505 ~ 5260164 (-) False G130744
TU193082 other downstream 268750 5245353 ~ 5252189 (-) True G130763
TU193048 other downstream 362937 5141505 ~ 5158002 (-) True G130744
TU193406 other upstream 839381 6362347 ~ 6363172 (-) True G131006
TU193577 other upstream 1108223 6631189 ~ 6639220 (-) False sh3bp5lb
TU193649 other upstream 1125472 6648438 ~ 6649389 (-) True polr1h
XR_006247130.1 other upstream 1180357 6703323 ~ 6703389 (-) True LOC122324260
XR_006247131.1 other upstream 1180905 6703871 ~ 6703937 (-) True LOC122324261

Expression Profile