RNA id: XR_006247088.1


Basic Information

Item Value
RNA id XR_006247088.1
length 749
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC122324017
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5610988 ~ 5612338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTGCTTTCGGGTCTCAtgactgaaaccacaggactgCTCGGCATTTATAGTTTGATCCAGACTGAATCAAATTATTCGCCCAGAGAGAGCTCTTGTATTTCTATGCTATTGCCAGCTAATTTTCCTCGTTTAAACCTCGAGTTTAGAGAAACGCGCGGACCTCTTGCTTATtcatattacaattattacacGCAGTtccaataattatttaattcaatgtatttatacaattaattttttggtGTACTTAACAGTTGCTtaacaacatttacattcagGCCTATTTGTATTCTGATACATGTATGAGTTTATTCTTGCGATCTTTAAAGTCGTGTCAAACTTGTAAACGTTACAGTGTTTATGTGAATTGTTTCCAGCATTTTCTACgCAGAGCGGCCGACCGGAGCCGCGGGGAAACAGCGCCCCCCTGAGGAGCAGACACTACACGCCCGGACACGGGGAAGAGATGGGGCTTGTTCACGCTCCTCTTTGCCTACTTACAGTTTTGTCCAAACGAATGAAGCCTGCGGTCGCTGCAGTGGATCCTCCGAGAAGATGCACTCAGTCTCTGAACCGTCCTACAGCTCCTGAGAGCATCAGGCCATTCAATCCAGCTGTGACCCGGACCTGCATGTAAACTGCACTTAAAACACTTCACATTTTAAGACTAATAACATCTTAGTCACGCACTGTCAAATGTTTGCCATCTTTTTTGCCGAATAAAGTGATGCAGTGTGTTTTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193190 lncRNA upstream 23597 5565380 ~ 5587515 (+) True G130835
TU193185 lncRNA upstream 62313 5548507 ~ 5548799 (+) True G130833
TU193148 lncRNA upstream 105698 5503266 ~ 5505414 (+) True G130813
TU192888 lncRNA upstream 205546 5404453 ~ 5405566 (+) True G130664
TU192909 lncRNA upstream 225564 5385136 ~ 5385548 (+) True G130677
TU193224 lncRNA downstream 2300 5614264 ~ 5632428 (+) True G130855
TU193228 lncRNA downstream 47569 5659533 ~ 5670532 (+) True G130858
TU193233 lncRNA downstream 62331 5674295 ~ 5674844 (+) True G130861
TU193274 lncRNA downstream 173166 5785130 ~ 5787803 (+) True LOC122323983
TU193265 lncRNA downstream 176602 5788566 ~ 5924971 (+) True G130890
XM_043218363.1 mRNA upstream 25457 5583505 ~ 5585655 (+) True LOC122324139
XM_043217936.1 mRNA upstream 39841 5569730 ~ 5571271 (+) True LOC122323836
XM_043218491.1 mRNA upstream 78225 5531960 ~ 5532887 (+) True LOC122324215
XM_043217323.1 mRNA upstream 110516 5484940 ~ 5500596 (+) False eya3
XM_043216990.1 mRNA downstream 1104 5613068 ~ 5614130 (+) True LOC122323266
XM_043218065.1 mRNA downstream 104732 5716696 ~ 5717681 (+) True rpa3
XM_043218150.1 mRNA downstream 113404 5725368 ~ 5739185 (+) True col28a1a
XM_043216946.1 mRNA downstream 133866 5745830 ~ 5752917 (+) False LOC122323254
XM_043218135.1 mRNA downstream 173167 5785131 ~ 5787793 (+) False LOC122323983
XR_006247105.1 other upstream 25457 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 296934 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 296934 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 431435 5176275 ~ 5179677 (+) True LOC122323259
TU192857 other upstream 447713 5162586 ~ 5163399 (+) True G130637
XR_006246984.1 other downstream 133837 5745801 ~ 5752782 (+) True LOC122323254
TU193273 other downstream 173166 5785130 ~ 5922973 (+) False LOC122323983
TU193467 other downstream 851119 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 907956 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 1080010 6691974 ~ 6695456 (+) False ppp1r11

Expression Profile