RNA id: TU193265


Basic Information

Item Value
RNA id TU193265
length 699
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G130890
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 5788566 ~ 5924971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTGGGATTTGGAGAGGGCTTCTTTAAAACTAGCGATCCCCAACCTTTGAGCGGCACTGTATATATTCCCTTACTAATGTGACAGGATAACTGAATATGGAGTCTACTTCAAACTAAGAagctttctgtgtttttgactTGAACTTACATCATATTAGGTCACCATAGCTTGACTGTTGTGACaatttgtctgtttttacaAGAAACAATTactgtgcaatttattttaaccaACAAGCCACGCTAGCCTACTCCTGTTTTGGttagagaaaagaaaagctctatttctatattttagaAACCTATAACCTGATAAGAGGATACAGTAACACGGCAACCTCGAAAAATACCTCGAATATAAATTCTATTTGGAAAAAACCCCTAAAAGATAGTCTAGTAAAGGGAACAGAGaaaataaggcaaaaaaaaaaaaaaaaaagcatttaaataatggCAACATTGTAGTTGTGTGGTCTGAGGCTTGATGGGATTACTGGTCTTTATCGGGCTTGTAGATGGACAGGGTTCTGGCCGAGGGGTCTGTGGCCTTGATCCAGCGGGGCATCCAGTAATGTGGGGTCCACTCACAGCGGCCGGGGTAATGCTTCTCAAAGATCGTCCTTATGAAGAAGCCCTCTTTGGTTGTGGGAGGATTGAAAGGGAACTTCTCACTGGCTTTCTCCAGCTGACAGTCGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193274 lncRNA upstream 763 5785130 ~ 5787803 (+) True LOC122323983
TU193233 lncRNA upstream 113722 5674295 ~ 5674844 (+) True G130861
TU193228 lncRNA upstream 118034 5659533 ~ 5670532 (+) True G130858
TU193224 lncRNA upstream 156138 5614264 ~ 5632428 (+) True G130855
TU193218 lncRNA upstream 176228 5610988 ~ 5612338 (+) True LOC122324017
TU193270 lncRNA downstream 5881 5930852 ~ 5932792 (+) False G130891
TU193271 lncRNA downstream 5881 5930852 ~ 5932792 (+) False G130891
TU193272 lncRNA downstream 5881 5930852 ~ 5932842 (+) True G130891
TU193325 lncRNA downstream 242655 6167626 ~ 6169359 (+) True G130940
TU193329 lncRNA downstream 302775 6227746 ~ 6228087 (+) True G130944
XM_043218135.1 mRNA upstream 773 5785131 ~ 5787793 (+) False LOC122323983
XM_043216946.1 mRNA upstream 35649 5745830 ~ 5752917 (+) False LOC122323254
XM_043218150.1 mRNA upstream 49381 5725368 ~ 5739185 (+) True col28a1a
XM_043218065.1 mRNA upstream 70885 5716696 ~ 5717681 (+) True rpa3
XM_043216990.1 mRNA upstream 174436 5613068 ~ 5614130 (+) True LOC122323266
XM_043217546.1 mRNA downstream 136578 6061549 ~ 6162543 (+) True jarid2b
XM_043217804.1 mRNA downstream 309054 6234025 ~ 6252339 (+) True mylipa
XM_043218022.1 mRNA downstream 341412 6266383 ~ 6344260 (+) True npr1a
XM_043218095.1 mRNA downstream 421818 6346789 ~ 6361192 (+) True ints3
XM_043218448.1 mRNA downstream 440547 6365518 ~ 6377599 (+) False gon4la
XR_006246984.1 other upstream 35784 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 202911 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 474388 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 474388 5223700 ~ 5314178 (+) False G130640
TU192837 other upstream 608889 5176275 ~ 5179677 (+) True LOC122323259
TU193467 other downstream 538112 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 594949 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 767003 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 767095 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 767095 6692066 ~ 6695456 (+) False ppp1r11

Expression Profile